myRT

myRT report for GCA_009831375.1_ASM983137v1

Download annotations/find similar RTs

Seq: CP027002.1 [Ruminococcus] gnavus ATCC 29149 chromosome, complete genome (3549191 bp)
Overview 1 RT 1: 1392354-1396914 bp 2 RT 2: 2758201-2762450 bp 3 RT 3: 2785054-2797812 bp 4 RT 4: 3180396-3183923 bp Neighborhood of RT #1 [1392354, 1397270] Phage_XkdX bZIP_XBP1 RVT-DGRs DUF3751 Tail_P2_I Neighborhood of RT #2 [2758201, 2762450] MATE_MepA_like RVT-GII HTH_XRE DNA_ligase_A_N Neighborhood of RT #3 [2785054, 2797934] YdiL YtxK COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 DUF3848 DUF3849 Neighborhood of RT #4 [3180396, 3184012] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 1392354-1392500 bp Ori: QHB23256.1 Feature: domain Description: Phage_XkdX Location: 1392360-1392468 bp Feature: domain Description: Phage_XkdX Location: 1 392360-1 392468 bp Feature: gene Location: 1392493-1392891 bp Ori: QHB23257.1 Feature: domain Description: bZIP_XBP1 Location: 1392754-1392841 bp Feature: domain Description: bZIP_XBP1 Location: 1 392754-1 392841 bp Feature: gene Location: 1392851-1393996 bp Ori: QHB23258.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1393100-1393739 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 3931 00-1 393739 bp Feature: gene Location: 1394457-1396334 bp Ori: QHB23259.1 Feature: domain Description: DUF3751 Location: 1394484-1394910 bp Feature: domain Description: DUF3751 Location: 1 394484-1 39491 0 bp Feature: gene Location: 1396347-1397270 bp Ori: QHB23260.1 Feature: domain Description: Tail_P2_I Location: 1396536-1396914 bp Feature: domain Description: Tail_P2_I Location: 1 396536-1 39691 4 bp Feature: gene Location: 2758201-2759502 bp Ori: QHB24445.1 Feature: domain Description: MATE_MepA_like Location: 2758213-2759470 bp Feature: domain Description: MATE_MepA_like Location: 275821 3-2759470 bp Feature: gene Location: 2759724-2759903 bp Feature: gene Location: 2759993-2761288 bp Ori: QHB24447.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2760248-2760938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2760248-2760938 bp Feature: gene Location: 2761463-2762269 bp Ori: QHB24448.1 Feature: domain Description: HTH_XRE Location: 2761490-2761661 bp Feature: domain Description: HTH_XRE Location: 2761 490-2761 661 bp Feature: domain Description: DNA_ligase_A_N Location: 2761994-2762240 bp Feature: domain Description: DNA_ligase_A_N Location: 2761 994-2762240 bp Feature: gene Location: 2762250-2762450 bp Feature: gene Location: 2785054-2785845 bp Ori: QHB24472.1 Feature: domain Description: YdiL Location: 2785066-2785672 bp Feature: domain Description: YdiL Location: 2785066-2785672 bp Feature: gene Location: 2785928-2793232 bp Feature: domain Description: YtxK Location: 2789954-2790629 bp Feature: domain Description: YtxK Location: 2789954-2790629 bp Feature: domain Description: COG4646 Location: 2790698-2793092 bp Feature: domain Description: COG4646 Location: 2790698-2793092 bp Feature: gene Location: 2793744-2795522 bp Ori: QHB24473.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794005-2794797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794005-2794797 bp Feature: domain Description: Intron_maturas2 Location: 2794902-2795118 bp Feature: domain Description: Intron_maturas2 Location: 2794902-27951 1 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2795298-2795484 bp Feature: domain Description: HNHc Note: nucleases Location: 2795298-2795484 bp Feature: gene Location: 2795627-2797114 bp Feature: domain Description: KOG1000 Location: 2796110-2796314 bp Feature: domain Description: KOG1 000 Location: 27961 1 0-279631 4 bp Feature: gene Location: 2797116-2797934 bp Ori: QHB24474.1 Feature: domain Description: DUF3848 Location: 2797134-2797413 bp Feature: domain Description: DUF3848 Location: 27971 34-279741 3 bp Feature: domain Description: DUF3849 Location: 2797449-2797812 bp Feature: domain Description: DUF3849 Location: 2797449-279781 2 bp Feature: gene Location: 3180396-3181538 bp Ori: QHB24813.1 Feature: domain Description: PHA00653 Location: 3180519-3181536 bp Feature: domain Description: PHA00653 Location: 31 8051 9-31 81 536 bp Feature: gene Location: 3181579-3181935 bp Ori: QHB24814.1 Feature: domain Description: Avd_like Location: 3181609-3181912 bp Feature: domain Description: Avd_like Location: 31 81 609-31 81 91 2 bp Feature: gene Location: 3182262-3183323 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3182499-3183120 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31 82499-31 831 20 bp Feature: gene Location: 3183348-3183527 bp Feature: gene Location: 3183524-3184012 bp Ori: QHB24816.1 Feature: domain Description: Phage_holin_4_1 Location: 3183563-3183923 bp Feature: domain Description: Phage_holin_4_1 Location: 31 83563-31 83923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), bZIP_XBP1 (cd14691), RVT-DGRs, DUF3751 (pfam12571), Tail_P2_I (pfam09684), MATE_MepA_like (cd13143), RVT-GII, HTH_XRE (smart00530), DNA_ligase_A_N (pfam04675), YdiL (COG1266)
YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3848 (pfam12959), DUF3849 (pfam12960), PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), Phage_holin_4_1 (pfam05105)