myRT

myRT report for GCA_009833945.1_ASM983394v1

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Seq: CP047160.1 Klebsiella pneumoniae strain KP19-2029 chromosome, complete genome (5521444 bp)
Overview 1 RT 1: 44284-49296 bp 2 RT 2: 1770289-1776022 bp 3 RT 3: 1889621-1895675 bp 4 RT 4: 2417706-2424177 bp 5 RT 5: 2439918-2447420 bp 6 RT 6: 3692268-3697354 bp 7 RT 7: 3844599-3849963 bp 8 RT 8: 4186901-4192455 bp Neighborhood of RT #1 [44284, 49296] RVT-GII HTH_28 rve Neighborhood of RT #2 [1770289, 1776027] dam Phage_GPA RVT-GII DinI Neighborhood of RT #3 [1889621, 1895677] Beta_helix RVT-GII PRK10276 PRK11557 Neighborhood of RT #4 [2417706, 2424191] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #5 [2439918, 2447455] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #6 [3692268, 3697362] umuC PRK10276 RVT-GII XerC PinE Neighborhood of RT #7 [3844599, 3850019] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #8 [4186901, 4192475] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 44284-44793 bp Feature: gene Location: 44802-45116 bp Feature: gene Location: 45555-47039 bp Ori: QHB93572.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45957-46647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45957-46647 bp Feature: gene Location: 47232-48635 bp Ori: QHB93573.1 Feature: domain Description: HTH_28 Location: 47280-47421 bp Feature: domain Description: HTH_28 Location: 47280-47421 bp Feature: domain Description: rve Location: 47661-48027 bp Feature: domain Description: rve Location: 47661 -48027 bp Feature: gene Location: 48664-49296 bp Feature: gene Location: 1770289-1771140 bp Ori: QHB95129.1 Feature: domain Description: dam Location: 1770292-1771063 bp Feature: domain Description: dam Location: 1 770292-1 771 063 bp Feature: gene Location: 1771137-1773521 bp Ori: QHB95130.1 Feature: domain Description: Phage_GPA Location: 1771701-1772667 bp Feature: domain Description: Phage_GPA Location: 1 771 701 -1 772667 bp Feature: gene Location: 1774002-1775486 bp Ori: QHB95131.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1774404-1775094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 774404-1 775094 bp Feature: gene Location: 1775594-1775782 bp Feature: gene Location: 1775794-1776027 bp Ori: QHB95133.1 Feature: domain Description: DinI Location: 1775839-1776022 bp Feature: domain Description: DinI Location: 1 775839-1 776022 bp Feature: gene Location: 1889621-1890586 bp Feature: gene Location: 1890724-1892034 bp Ori: QHB95258.1 Feature: domain Description: Beta_helix Location: 1891171-1891687 bp Feature: domain Description: Beta_helix Location: 1 891 1 71 -1 891 687 bp Feature: gene Location: 1892490-1893973 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892892-1893582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 892892-1 893582 bp Feature: gene Location: 1894246-1894617 bp Ori: QHB95259.1 Feature: domain Description: PRK10276 Location: 1894291-1894450 bp Feature: domain Description: PRK1 0276 Location: 1 894291 -1 894450 bp Feature: gene Location: 1894829-1895677 bp Ori: QHB95260.1 Feature: domain Description: PRK11557 Location: 1894847-1895675 bp Feature: domain Description: PRK1 1 557 Location: 1 894847-1 895675 bp Feature: gene Location: 2417706-2419130 bp Ori: QHB95698.1 Gene: sbcB Feature: domain Description: SbcB Location: 2417712-2419128 bp Feature: domain Description: SbcB Location: 241 771 2-241 91 28 bp Feature: gene Location: 2419305-2420474 bp Ori: QHB95699.1 Gene: dacD Feature: domain Description: dacD Location: 2419314-2420469 bp Feature: domain Description: dacD Location: 241 931 4-2420469 bp Feature: gene Location: 2420995-2422479 bp Ori: QHB95700.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2421397-2422087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2421 397-2422087 bp Feature: gene Location: 2422561-2423034 bp Ori: QHB95701.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 2422564-2423023 bp Feature: domain Description: PRK1 001 6 Location: 2422564-2423023 bp Feature: gene Location: 2423133-2424191 bp Ori: QHB95702.1 Feature: domain Description: YccC Location: 2423139-2424177 bp Feature: domain Description: YccC Location: 24231 39-24241 77 bp Feature: gene Location: 2439918-2441021 bp Ori: QHB95720.1 Feature: domain Description: STKc_PknB_like Location: 2440050-2440491 bp Feature: domain Description: STKc_PknB_like Location: 2440050-2440491 bp Feature: gene Location: 2441091-2441333 bp Feature: gene Location: 2441580-2442680 bp Ori: QHB95721.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2441763-2442291 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2441 763-2442291 bp Feature: gene Location: 2442795-2445041 bp Ori: QHB95722.1 Feature: domain Description: AAA_15 Location: 2442798-2443806 bp Feature: domain Description: AAA_1 5 Location: 2442798-2443806 bp Feature: gene Location: 2446436-2447455 bp Ori: QHB95723.1 Feature: domain Description: DUF4917 Location: 2446496-2447420 bp Feature: domain Description: DUF491 7 Location: 2446496-2447420 bp Feature: gene Location: 3692268-3693533 bp Ori: QHB96835.1 Gene: umuC Feature: domain Description: umuC Location: 3692271-3693531 bp Feature: domain Description: umuC Location: 3692271 -3693531 bp Feature: gene Location: 3693535-3693954 bp Ori: QHB98610.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3693538-3693949 bp Feature: domain Description: PRK1 0276 Location: 3693538-3693949 bp Feature: gene Location: 3694034-3695518 bp Ori: QHB96836.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3694436-3695126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3694436-36951 26 bp Feature: gene Location: 3696416-3696838 bp Ori: QHB96837.1 Feature: domain Description: XerC Location: 3696452-3696797 bp Feature: domain Description: XerC Location: 3696452-3696797 bp Feature: gene Location: 3696916-3697362 bp Feature: domain Description: PinE Location: 3696922-3697354 bp Feature: domain Description: PinE Location: 3696922-3697354 bp Feature: gene Location: 3844599-3845864 bp Ori: QHB96981.1 Gene: umuC Feature: domain Description: umuC Location: 3844602-3845862 bp Feature: domain Description: umuC Location: 3844602-3845862 bp Feature: gene Location: 3845867-3846286 bp Ori: QHB96982.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3845870-3846281 bp Feature: domain Description: PRK1 0276 Location: 3845870-3846281 bp Feature: gene Location: 3846365-3847849 bp Ori: QHB96983.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3846767-3847457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3846767-3847457 bp Feature: gene Location: 3848467-3848709 bp Ori: QHB96984.1 Feature: domain Description: DinI Location: 3848518-3848698 bp Feature: domain Description: DinI Location: 384851 8-3848698 bp Feature: gene Location: 3848880-3850019 bp Ori: QHB96985.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3849063-3849963 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3849063-3849963 bp Feature: gene Location: 4186901-4187779 bp Ori: QHB98632.1 Feature: domain Description: Phage_CI_repr Location: 4186928-4187111 bp Feature: domain Description: Phage_CI_repr Location: 41 86928-41 871 1 1 bp Feature: domain Description: Phage_CI_repr Location: 4187240-4187432 bp Feature: domain Description: Phage_CI_repr Location: 41 87240-41 87432 bp Feature: domain Description: Phage_CI_C Location: 4187459-4187753 bp Feature: domain Description: Phage_CI_C Location: 41 87459-41 87753 bp Feature: gene Location: 4187791-4188735 bp Feature: gene Location: 4188834-4190318 bp Ori: QHB97294.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4189236-4189926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 89236-41 89926 bp Feature: gene Location: 4190737-4191789 bp Ori: QHB97295.1 Feature: domain Description: int Location: 4190740-4191739 bp Feature: domain Description: int Location: 41 90740-41 91 739 bp Feature: gene Location: 4191912-4192475 bp Ori: QHB97296.1 Feature: domain Description: YbjK Location: 4191918-4192455 bp Feature: domain Description: YbjK Location: 41 91 91 8-41 92455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), rve (pfam00665), dam (TIGR00571), Phage_GPA (pfam05840), DinI (pfam06183), Beta_helix (pfam13229), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK11557 (MurR/RpiR family transcriptional regulator), SbcB (COG2925)
dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), XerC (COG4973), PinE (COG1961)
GT9_LPS_heptosyltransferase (cd03789), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226)

Seq: CP047161.1 Klebsiella pneumoniae strain KP19-2029 plasmid pKP19-2029-KPC2, complete sequence (127240 bp)
Overview 1 RT 1: 18403-23912 bp 2 RT 2: 84056-89409 bp Neighborhood of RT #1 [18403, 24037] DUF3560 RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [84056, 89546] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 18403-19764 bp Ori: QHB98714.1 Feature: domain Description: DUF3560 Location: 18670-19027 bp Feature: domain Description: DUF3560 Location: 18670-1902 7 bp Feature: gene Location: 19816-20046 bp Feature: gene Location: 21446-23113 bp Ori: QHB98716.1 Gene: ltrA Feature: domain Description: RVT_N Location: 21494-21731 bp Feature: domain Description: RVT_N Location: 2 1494-2 1731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21782-22424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1782 -2 2 42 4 bp Feature: domain Description: GIIM Note: maturase Location: 22475-22709 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 475-2 2 709 bp Feature: domain Description: HNHc Note: nucleases Location: 22919-23078 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 919-2 3078 bp Feature: gene Location: 23427-23618 bp Feature: gene Location: 23615-24037 bp Ori: QHB98718.1 Feature: domain Description: DUF1380 Location: 23618-23912 bp Feature: domain Description: DUF1380 Location: 2 3618-2 3912 bp Feature: gene Location: 84056-85327 bp Ori: QHB98764.1 Gene: umuC Feature: domain Description: umuC Location: 84059-85319 bp Feature: domain Description: umuC Location: 84059-85319 bp Feature: gene Location: 85327-85758 bp Ori: QHB98765.1 Gene: umuD Feature: domain Description: PRK10276 Location: 85378-85741 bp Feature: domain Description: PRK102 76 Location: 85378-85741 bp Feature: gene Location: 86168-87652 bp Ori: QHB98766.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86570-87260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86570-872 60 bp Feature: gene Location: 87901-88872 bp Ori: QHB98767.1 Feature: domain Description: StbA Location: 87904-88849 bp Feature: domain Description: StbA Location: 87904-88849 bp Feature: gene Location: 88875-89546 bp Ori: QHB98768.1 Feature: domain Description: Plasmid_stab_B Location: 88890-89097 bp Feature: domain Description: Plasmid_stab_B Location: 88890-89097 bp Feature: domain Description: Plasmid_stab_B Location: 89202-89409 bp Feature: domain Description: Plasmid_stab_B Location: 892 02 -89409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)