myRT

myRT report for GCA_009834545.1_ASM983454v1

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Seq: CP019427.1 Pseudomonas sp. S04, complete genome (6098669 bp)
Overview 1 RT 1: 2237277-2242210 bp 2 RT 2: 2296807-2301764 bp 3 RT 3: 3860412-3866605 bp 4 RT 4: 5012937-5025413 bp Neighborhood of RT #1 [2237277, 2242233] RVT_N RVT-GII YkfC LysR M20_Acy1-like Neighborhood of RT #2 [2296807, 2301793] HisM HisM RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #3 [3860412, 3866700] DUF4123 RVT_N RVT-GII YkfC HTH_Tnp_1 HTH_Tnp_1 Neighborhood of RT #4 [5012937, 5025413] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 dnaG RVT-UG25 Feature: gene Location: 2237277-2237509 bp Feature: gene Location: 2237914-2238162 bp Feature: gene Location: 2238159-2239820 bp Ori: QHD00733.1 Feature: domain Description: RVT_N Location: 2238204-2238447 bp Feature: domain Description: RVT_N Location: 2238204-2238447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2238492-2239125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2238492-22391 25 bp Feature: domain Description: YkfC Location: 2239125-2239488 bp Feature: domain Description: YkfC Location: 22391 25-2239488 bp Feature: gene Location: 2239975-2240913 bp Ori: QHD04059.1 Feature: domain Description: LysR Location: 2239978-2240863 bp Feature: domain Description: LysR Location: 2239978-2240863 bp Feature: gene Location: 2241040-2242233 bp Ori: QHD04060.1 Feature: domain Description: M20_Acy1-like Location: 2241088-2242210 bp Feature: domain Description: M20_Acy1 -like Location: 2241 088-224221 0 bp Feature: gene Location: 2296807-2297475 bp Ori: QHD00775.1 Feature: domain Description: HisM Location: 2296819-2297449 bp Feature: domain Description: HisM Location: 229681 9-2297449 bp Feature: gene Location: 2297478-2297870 bp Ori: QHD00776.1 Feature: domain Description: HisM Location: 2297481-2297865 bp Feature: domain Description: HisM Location: 2297481 -2297865 bp Feature: gene Location: 2297966-2299762 bp Ori: QHD00777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2298680-2299370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2298680-2299370 bp Feature: gene Location: 2299848-2301374 bp Ori: QHD00778.1 Feature: domain Description: LZ_Tnp_IS66 Location: 2299977-2300187 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2299977-23001 87 bp Feature: domain Description: zf-IS66 Location: 2300214-2300340 bp Feature: domain Description: zf-IS66 Location: 230021 4-2300340 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2300382-2301225 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2300382-2301 225 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2301246-2301357 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2301 246-2301 357 bp Feature: gene Location: 2301458-2301793 bp Ori: QHD00779.1 Feature: domain Description: TnpB_IS66 Location: 2301476-2301764 bp Feature: domain Description: TnpB_IS66 Location: 2301 476-2301 764 bp Feature: gene Location: 3860412-3861278 bp Ori: QHD02051.1 Feature: domain Description: DUF4123 Location: 3860472-3860808 bp Feature: domain Description: DUF41 23 Location: 3860472-3860808 bp Feature: gene Location: 3861275-3863776 bp Feature: gene Location: 3863892-3865553 bp Ori: QHD02052.1 Feature: domain Description: RVT_N Location: 3863937-3864180 bp Feature: domain Description: RVT_N Location: 3863937-38641 80 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3864225-3864858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3864225-3864858 bp Feature: domain Description: YkfC Location: 3864858-3865221 bp Feature: domain Description: YkfC Location: 3864858-3865221 bp Feature: gene Location: 3865550-3865798 bp Feature: gene Location: 3866200-3866700 bp Ori: QHD02053.1 Feature: domain Description: HTH_Tnp_1 Location: 3866212-3866362 bp Feature: domain Description: HTH_Tnp_1 Location: 386621 2-3866362 bp Feature: domain Description: HTH_Tnp_1 Location: 3866377-3866605 bp Feature: domain Description: HTH_Tnp_1 Location: 3866377-3866605 bp Feature: gene Location: 5012937-5014469 bp Ori: QHD03028.1 Feature: domain Description: LZ_Tnp_IS66 Location: 5013042-5013255 bp Feature: domain Description: LZ_Tnp_IS66 Location: 501 3042-501 3255 bp Feature: domain Description: zf-IS66 Location: 5013285-5013408 bp Feature: domain Description: zf-IS66 Location: 501 3285-501 3408 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5013453-5014308 bp Feature: domain Description: DDE_Tnp_IS66 Location: 501 3453-501 4308 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5014329-5014443 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 501 4329-501 4443 bp Feature: gene Location: 5014488-5014847 bp Ori: QHD03029.1 Feature: domain Description: TnpB_IS66 Location: 5014518-5014812 bp Feature: domain Description: TnpB_IS66 Location: 501 451 8-501 481 2 bp Feature: gene Location: 5015078-5022604 bp Ori: QHD03030.1 Feature: domain Description: dnaG Location: 5015096-5016308 bp Feature: domain Description: dnaG Location: 501 5096-501 6308 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 5017100-5017673 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 501 71 00-501 7673 bp Feature: gene Location: 5023727-5024431 bp Feature: gene Location: 5024772-5025413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), LysR (COG0583), M20_Acy1-like (cd08660), HisM (COG0765), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
TnpB_IS66 (pfam05717), DUF4123 (pfam13503), HTH_Tnp_1 (pfam01527), dnaG (TIGR01391), RVT-UG25