myRT

myRT report for GCA_009856545.1_ASM985654v1

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Seq: CP047219.1 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed1, complete sequence (135293 bp)
Overview 1 RT 1: 91643-97761 bp Neighborhood of RT #1 [91643, 97793] TraU RVT-GII GIIM TrbC_Ftype PRK12355 Feature: gene Location: 91643-91921 bp Feature: gene Location: 91918-92940 bp Ori: QHD70667.1 Gene: traU Feature: domain Description: TraU Location: 92014-92932 bp Feature: domain Description: TraU Location: 9201 4-92932 bp Feature: gene Location: 93536-95158 bp Ori: QHD70668.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93860-94616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93860-9461 6 bp Feature: domain Description: GIIM Note: maturase Location: 94694-94892 bp Feature: domain Description: GIIM Note: maturase Location: 94694-94892 bp Feature: gene Location: 95186-95920 bp Ori: QHD70704.1 Gene: trbC Feature: domain Description: TrbC_Ftype Location: 95519-95852 bp Feature: domain Description: TrbC_Ftype Location: 9551 9-95852 bp Feature: gene Location: 95922-97793 bp Ori: QHD70669.1 Gene: traN Feature: domain Description: PRK12355 Location: 95973-97761 bp Feature: domain Description: PRK1 2355 Location: 95973-97761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraU (pfam06834), RVT-GII, GIIM (pfam08388), TrbC_Ftype (TIGR02742), PRK12355 (type-F conjugative transfer system mating-pair stabilization protein TraN)

Seq: CP047218.1 Sphingobium yanoikuyae strain YC-JY1 chromosome, complete genome (5482815 bp)
Overview 1 RT 1: 1668528-1675545 bp 2 RT 2: 2537009-2541427 bp 3 RT 3: 4147358-4151743 bp 4 RT 4: 4777577-4782157 bp 5 RT 5: 4826516-4833309 bp 6 RT 6: 4835542-4838833 bp Neighborhood of RT #1 [1668528, 1675616] FN3K TIR_2 DUF3298 RVT-GII Intron_maturas2 HNHc Spo0J XerD Neighborhood of RT #2 [2537009, 2541486] Sigma70_r4_2 ArdC RVT-GII Intron_maturas2 ArdC AlpA Neighborhood of RT #3 [4147358, 4151835] AlpA ArdC RVT-GII Intron_maturas2 ArdC Sigma70_r4_2 Neighborhood of RT #4 [4777577, 4782157] MPTase-PolyVal RVT-GII Intron_maturas2 ArdC Neighborhood of RT #5 [4826516, 4833407] RVT-GII Intron_maturas2 HNHc DUF3768 VbhA_like Neighborhood of RT #6 [4835542, 4839090] HTH_XRE RVT-Retrons umuC POD-like_MBL-fold Feature: gene Location: 1668528-1669331 bp Ori: QHD67004.1 Feature: domain Description: FN3K Location: 1668669-1669317 bp Feature: domain Description: FN3K Location: 1668669-1669317 bp Feature: gene Location: 1669528-1670778 bp Ori: QHD67005.1 Feature: domain Description: TIR_2 Location: 1669549-1669912 bp Feature: domain Description: TIR_2 Location: 1669549-1669912 bp Feature: domain Description: DUF3298 Location: 1670371-1670626 bp Feature: domain Description: DUF32 98 Location: 1670371-167062 6 bp Feature: gene Location: 1671058-1672923 bp Ori: QHD67006.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1671325-1672156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167132 5-1672 156 bp Feature: domain Description: Intron_maturas2 Location: 1672297-1672555 bp Feature: domain Description: Intron_maturas2 Location: 1672 2 97-1672 555 bp Feature: domain Description: HNHc Note: nucleases Location: 1672723-1672870 bp Feature: domain Description: HNHc Note: nucleases Location: 1672 72 3-1672 870 bp Feature: gene Location: 1673800-1674366 bp Ori: QHD70291.1 Feature: domain Description: Spo0J Location: 1673806-1674148 bp Feature: domain Description: Spo0J Location: 1673806-1674148 bp Feature: gene Location: 1674465-1675616 bp Ori: QHD67007.1 Feature: domain Description: XerD Location: 1674570-1675545 bp Feature: domain Description: XerD Location: 1674570-1675545 bp Feature: gene Location: 2537009-2537257 bp Ori: QHD67688.1 Feature: domain Description: Sigma70_r4_2 Location: 2537054-2537165 bp Feature: domain Description: Sigma70_r4_2 Location: 2 537054-2 537165 bp Feature: gene Location: 2537254-2537751 bp Feature: domain Description: ArdC Location: 2537260-2537743 bp Feature: domain Description: ArdC Location: 2 5372 60-2 537743 bp Feature: gene Location: 2537772-2539601 bp Ori: QHD67689.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2537952-2538789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 537952 -2 538789 bp Feature: domain Description: Intron_maturas2 Location: 2538870-2539158 bp Feature: domain Description: Intron_maturas2 Location: 2 538870-2 539158 bp Feature: gene Location: 2540326-2540715 bp Feature: domain Description: ArdC Location: 2540335-2540716 bp Feature: domain Description: ArdC Location: 2 540335-2 540716 bp Feature: gene Location: 2541253-2541486 bp Ori: QHD67690.1 Feature: domain Description: AlpA Location: 2541262-2541427 bp Feature: domain Description: AlpA Location: 2 5412 62 -2 54142 7 bp Feature: gene Location: 4147358-4147591 bp Ori: QHD69053.1 Feature: domain Description: AlpA Location: 4147367-4147532 bp Feature: domain Description: AlpA Location: 4147367-4147532 bp Feature: gene Location: 4148129-4148518 bp Feature: domain Description: ArdC Location: 4148141-4148519 bp Feature: domain Description: ArdC Location: 4148141-4148519 bp Feature: gene Location: 4149243-4151072 bp Ori: QHD69054.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4149423-4150260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414942 3-41502 60 bp Feature: domain Description: Intron_maturas2 Location: 4150341-4150629 bp Feature: domain Description: Intron_maturas2 Location: 4150341-415062 9 bp Feature: gene Location: 4151087-4151590 bp Feature: domain Description: ArdC Location: 4151099-4151582 bp Feature: domain Description: ArdC Location: 4151099-4151582 bp Feature: gene Location: 4151587-4151835 bp Ori: QHD69055.1 Feature: domain Description: Sigma70_r4_2 Location: 4151632-4151743 bp Feature: domain Description: Sigma70_r4_2 Location: 4151632 -4151743 bp Feature: gene Location: 4777577-4777837 bp Feature: gene Location: 4777985-4778491 bp Feature: domain Description: MPTase-PolyVal Location: 4778066-4778435 bp Feature: domain Description: MPTase-PolyVal Location: 4778066-4778435 bp Feature: gene Location: 4778515-4780343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4778695-4779532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4778695-4779532 bp Feature: domain Description: Intron_maturas2 Location: 4779613-4779901 bp Feature: domain Description: Intron_maturas2 Location: 4779613-4779901 bp Feature: gene Location: 4781069-4781431 bp Feature: domain Description: ArdC Location: 4781081-4781432 bp Feature: domain Description: ArdC Location: 4781081-4781432 bp Feature: gene Location: 4781828-4782157 bp Feature: gene Location: 4826516-4828039 bp Feature: gene Location: 4828702-4829622 bp Feature: gene Location: 4829815-4831680 bp Ori: QHD69610.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4830082-4830913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4830082 -4830913 bp Feature: domain Description: Intron_maturas2 Location: 4831054-4831312 bp Feature: domain Description: Intron_maturas2 Location: 4831054-4831312 bp Feature: domain Description: HNHc Note: nucleases Location: 4831480-4831627 bp Feature: domain Description: HNHc Note: nucleases Location: 4831480-483162 7 bp Feature: gene Location: 4832636-4833022 bp Ori: QHD69611.1 Feature: domain Description: DUF3768 Location: 4832726-4833017 bp Feature: domain Description: DUF3768 Location: 4832 72 6-4833017 bp Feature: gene Location: 4833150-4833407 bp Ori: QHD69612.1 Feature: domain Description: VbhA_like Location: 4833225-4833309 bp Feature: domain Description: VbhA_like Location: 48332 2 5-4833309 bp Feature: gene Location: 4835542-4835679 bp Feature: gene Location: 4836267-4836596 bp Ori: QHD69616.1 Feature: domain Description: HTH_XRE Location: 4836282-4836441 bp Feature: domain Description: HTH_XRE Location: 48362 82 -4836441 bp Feature: gene Location: 4836559-4837524 bp Ori: QHD69617.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4836715-4837222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4836715-48372 2 2 bp Feature: gene Location: 4837569-4837919 bp Feature: domain Description: umuC Location: 4837578-4837917 bp Feature: domain Description: umuC Location: 4837578-4837917 bp Feature: gene Location: 4838200-4839090 bp Ori: QHD69618.1 Feature: domain Description: POD-like_MBL-fold Location: 4838233-4838833 bp Feature: domain Description: POD-like_MBL-fold Location: 48382 33-4838833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3K (COG3001), TIR_2 (pfam13676), DUF3298 (pfam11738), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spo0J (COG1475), XerD (COG4974), Sigma70_r4_2 (pfam08281), ArdC (COG4227)
AlpA (COG3311), MPTase-PolyVal (pfam18818), DUF3768 (pfam12599), VbhA_like (cl17006), HTH_XRE (smart00530), RVT-Retrons, umuC (PRK03609), POD-like_MBL-fold (cd07724)

Seq: CP047222.1 Sphingobium yanoikuyae strain YC-JY1 plasmid unnamed4, complete sequence (45505 bp)
Overview 1 RT 1: 36224-43666 bp Neighborhood of RT #1 [36224, 43695] MPTase-PolyVal RVT-GII Intron_maturas2 ArdC RVT-GII Intron_maturas2 HNHc SSB_OBF Feature: gene Location: 36224-36526 bp Feature: gene Location: 36586-37116 bp Feature: domain Description: MPTase-PolyVal Location: 36673-37048 bp Feature: domain Description: MPTase-PolyVal Location: 3 6673 -3 7048 bp Feature: gene Location: 37137-38966 bp Ori: QHD70876.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37317-38154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 73 17-3 8154 bp Feature: domain Description: Intron_maturas2 Location: 38235-38523 bp Feature: domain Description: Intron_maturas2 Location: 3 823 5-3 8523 bp Feature: gene Location: 39691-40110 bp Feature: domain Description: ArdC Location: 39724-40111 bp Feature: domain Description: ArdC Location: 3 9724-40111 bp Feature: gene Location: 41092-42957 bp Ori: QHD70877.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41359-42190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 413 59-42190 bp Feature: domain Description: Intron_maturas2 Location: 42331-42589 bp Feature: domain Description: Intron_maturas2 Location: 423 3 1-42589 bp Feature: domain Description: HNHc Note: nucleases Location: 42757-42904 bp Feature: domain Description: HNHc Note: nucleases Location: 42757-42904 bp Feature: gene Location: 43101-43367 bp Feature: gene Location: 43372-43695 bp Ori: QHD70879.1 Feature: domain Description: SSB_OBF Location: 43432-43666 bp Feature: domain Description: SSB_OBF Location: 43 43 2-43 666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), ArdC (COG4227), HNHc (smart00507), SSB_OBF (cd04496)