myRT

myRT report for GCA_009856585.1_ASM985658v1

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Seq: CP047194.1 Klebsiella pneumoniae strain Kp36 plasmid unnamed2, complete sequence (142228 bp)
Overview 1 RT 1: 20411-25893 bp 2 RT 2: 99786-105295 bp Neighborhood of RT #1 [20411, 25901] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 umuC Neighborhood of RT #2 [99786, 105420] DUF3560 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 20411-21082 bp Ori: QHD78040.1 Feature: domain Description: Plasmid_stab_B Location: 20426-20633 bp Feature: domain Description: Plasmid_stab_B Location: 20426-20633 bp Feature: domain Description: Plasmid_stab_B Location: 20738-20945 bp Feature: domain Description: Plasmid_stab_B Location: 20738-20945 bp Feature: gene Location: 21085-22056 bp Ori: QHD78041.1 Feature: domain Description: StbA Location: 21088-22033 bp Feature: domain Description: StbA Location: 21 088-22033 bp Feature: gene Location: 22305-23789 bp Ori: QHD78159.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22707-23397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22707-23397 bp Feature: gene Location: 24199-24630 bp Ori: QHD78042.1 Gene: umuD Feature: domain Description: PRK10276 Location: 24250-24613 bp Feature: domain Description: PRK1 0276 Location: 24250-2461 3 bp Feature: gene Location: 24630-25901 bp Ori: QHD78043.1 Gene: umuC Feature: domain Description: umuC Location: 24633-25893 bp Feature: domain Description: umuC Location: 24633-25893 bp Feature: gene Location: 99786-101147 bp Ori: QHD78116.1 Feature: domain Description: DUF3560 Location: 100053-100410 bp Feature: domain Description: DUF3560 Location: 1 00053-1 0041 0 bp Feature: gene Location: 101199-101429 bp Feature: gene Location: 102829-104496 bp Ori: QHD78118.1 Gene: ltrA Feature: domain Description: RVT_N Location: 102877-103114 bp Feature: domain Description: RVT_N Location: 1 02877-1 031 1 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103165-103807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 031 65-1 03807 bp Feature: domain Description: GIIM Note: maturase Location: 103858-104092 bp Feature: domain Description: GIIM Note: maturase Location: 1 03858-1 04092 bp Feature: domain Description: HNHc Note: nucleases Location: 104302-104461 bp Feature: domain Description: HNHc Note: nucleases Location: 1 04302-1 04461 bp Feature: gene Location: 104810-105001 bp Feature: gene Location: 104998-105420 bp Ori: QHD78120.1 Feature: domain Description: DUF1380 Location: 105001-105295 bp Feature: domain Description: DUF1 380 Location: 1 05001 -1 05295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), DUF3560 (pfam12083), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: CP047192.1 Klebsiella pneumoniae strain Kp36 chromosome, complete genome (5517016 bp)
Overview 1 RT 1: 1247798-1253531 bp 2 RT 2: 1413994-1417358 bp 3 RT 3: 1433710-1439787 bp 4 RT 4: 1638385-1643578 bp 5 RT 5: 1877545-1884016 bp 6 RT 6: 1899757-1907259 bp 7 RT 7: 3302873-3308237 bp 8 RT 8: 3375705-3380892 bp 9 RT 9: 3579867-3586798 bp 10 RT 10: 3747023-3752577 bp 11 RT 11: 3835891-3841484 bp Neighborhood of RT #1 [1247798, 1253536] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1413994, 1417432] RVT-GII Terminase_2 Neighborhood of RT #3 [1433710, 1439789] PHA01972 RVT-GII PHA02515 Phage_T7_tail Neighborhood of RT #4 [1638385, 1643628] IclR PRK15440 RVT-GII PRK15440 MFS_ExuT_GudP_like Neighborhood of RT #5 [1877545, 1884030] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #6 [1899757, 1907294] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #7 [3302873, 3308293] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #8 [3375705, 3380892] PRK10597 RVT-GII PRK05318 Neighborhood of RT #9 [3579867, 3586803] YCCS TfoX_N TfoX_C RVT-GII sula PRK10808 Neighborhood of RT #10 [3747023, 3752597] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Neighborhood of RT #11 [3835891, 3841525] UvrB RVT-GII LivF Feature: gene Location: 1247798-1248649 bp Ori: QHD73812.1 Feature: domain Description: dam Location: 1247801-1248572 bp Feature: domain Description: dam Location: 12 47801-12 48572 bp Feature: gene Location: 1248646-1251030 bp Ori: QHD73813.1 Feature: domain Description: Phage_GPA Location: 1249210-1250176 bp Feature: domain Description: Phage_GPA Location: 12 492 10-12 50176 bp Feature: gene Location: 1251511-1252995 bp Ori: QHD77610.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1251913-1252603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 51913-12 52 603 bp Feature: gene Location: 1253103-1253291 bp Feature: gene Location: 1253303-1253536 bp Ori: QHD73815.1 Feature: domain Description: DinI Location: 1253348-1253531 bp Feature: domain Description: DinI Location: 12 53348-12 53531 bp Feature: gene Location: 1413994-1414197 bp Feature: gene Location: 1414190-1414528 bp Feature: gene Location: 1414625-1416109 bp Ori: QHD77617.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1415027-1415717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141502 7-1415717 bp Feature: gene Location: 1416513-1416770 bp Feature: gene Location: 1416848-1417432 bp Ori: QHD73973.1 Feature: domain Description: Terminase_2 Location: 1416893-1417358 bp Feature: domain Description: Terminase_2 Location: 1416893-1417358 bp Feature: gene Location: 1433710-1436466 bp Ori: QHD73990.1 Feature: domain Description: PHA01972 Location: 1433713-1436455 bp Feature: domain Description: PHA01972 Location: 1433713-1436455 bp Feature: gene Location: 1436943-1437218 bp Feature: gene Location: 1437281-1438765 bp Ori: QHD77619.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1437683-1438373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1437683-1438373 bp Feature: gene Location: 1439307-1439789 bp Feature: domain Description: PHA02515 Location: 1439319-1439670 bp Feature: domain Description: PHA02 515 Location: 1439319-1439670 bp Feature: domain Description: Phage_T7_tail Location: 1439712-1439787 bp Feature: domain Description: Phage_T7_tail Location: 1439712 -1439787 bp Feature: gene Location: 1638385-1639170 bp Ori: QHD74170.1 Feature: domain Description: IclR Location: 1638412-1639138 bp Feature: domain Description: IclR Location: 1638412 -1639138 bp Feature: gene Location: 1639181-1639366 bp Ori: QHD74171.1 Feature: domain Description: PRK15440 Location: 1639184-1639331 bp Feature: domain Description: PRK15440 Location: 1639184-1639331 bp Feature: gene Location: 1639699-1641183 bp Ori: QHD77625.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1640101-1640791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1640101-1640791 bp Feature: gene Location: 1641241-1642296 bp Gene: rhmD Feature: domain Description: PRK15440 Location: 1641247-1642294 bp Feature: domain Description: PRK15440 Location: 16412 47-1642 2 94 bp Feature: gene Location: 1642339-1643628 bp Ori: QHD77626.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 1642381-1643578 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1642 381-1643578 bp Feature: gene Location: 1877545-1878969 bp Ori: QHD74350.1 Gene: sbcB Feature: domain Description: SbcB Location: 1877551-1878967 bp Feature: domain Description: SbcB Location: 1877551-1878967 bp Feature: gene Location: 1879144-1880313 bp Ori: QHD74351.1 Gene: dacD Feature: domain Description: dacD Location: 1879153-1880308 bp Feature: domain Description: dacD Location: 1879153-1880308 bp Feature: gene Location: 1880834-1882318 bp Ori: QHD77639.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1881236-1881926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18812 36-188192 6 bp Feature: gene Location: 1882400-1882873 bp Ori: QHD74352.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1882403-1882862 bp Feature: domain Description: PRK10016 Location: 1882 403-1882 862 bp Feature: gene Location: 1882972-1884030 bp Ori: QHD74353.1 Feature: domain Description: YccC Location: 1882978-1884016 bp Feature: domain Description: YccC Location: 1882 978-1884016 bp Feature: gene Location: 1899757-1900860 bp Ori: QHD74371.1 Feature: domain Description: STKc_PknB_like Location: 1899889-1900330 bp Feature: domain Description: STKc_PknB_like Location: 1899889-1900330 bp Feature: gene Location: 1900930-1901172 bp Feature: gene Location: 1901419-1902519 bp Ori: QHD74372.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1901602-1902130 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1901602 -1902 130 bp Feature: gene Location: 1902634-1904880 bp Ori: QHD74373.1 Feature: domain Description: AAA_15 Location: 1902637-1903645 bp Feature: domain Description: AAA_15 Location: 1902 637-1903645 bp Feature: gene Location: 1906275-1907294 bp Ori: QHD74374.1 Feature: domain Description: DUF4917 Location: 1906335-1907259 bp Feature: domain Description: DUF4917 Location: 1906335-19072 59 bp Feature: gene Location: 3302873-3304138 bp Ori: QHD75638.1 Gene: umuC Feature: domain Description: umuC Location: 3302876-3304136 bp Feature: domain Description: umuC Location: 3302 876-3304136 bp Feature: gene Location: 3304141-3304560 bp Ori: QHD75639.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3304144-3304555 bp Feature: domain Description: PRK102 76 Location: 3304144-3304555 bp Feature: gene Location: 3304639-3306123 bp Ori: QHD77721.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3305041-3305731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3305041-3305731 bp Feature: gene Location: 3306741-3306983 bp Ori: QHD75640.1 Feature: domain Description: DinI Location: 3306792-3306972 bp Feature: domain Description: DinI Location: 3306792 -3306972 bp Feature: gene Location: 3307154-3308293 bp Ori: QHD75641.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3307337-3308237 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3307337-33082 37 bp Feature: gene Location: 3375705-3375995 bp Feature: gene Location: 3376007-3376240 bp Ori: QHD75710.1 Feature: domain Description: PRK10597 Location: 3376010-3376235 bp Feature: domain Description: PRK10597 Location: 3376010-33762 35 bp Feature: gene Location: 3376319-3377803 bp Ori: QHD77725.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3376721-3377411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337672 1-3377411 bp Feature: gene Location: 3378644-3380005 bp Ori: QHD75711.1 Gene: dgt Feature: domain Description: PRK05318 Location: 3378668-3379967 bp Feature: domain Description: PRK05318 Location: 3378668-3379967 bp Feature: gene Location: 3380179-3380892 bp Feature: gene Location: 3579867-3582002 bp Ori: QHD75904.1 Gene: yccS Feature: domain Description: YCCS Location: 3579891-3581982 bp Feature: domain Description: YCCS Location: 3579891-3581982 bp Feature: gene Location: 3582016-3582612 bp Ori: QHD75905.1 Feature: domain Description: TfoX_N Location: 3582064-3582331 bp Feature: domain Description: TfoX_N Location: 3582 064-3582 331 bp Feature: domain Description: TfoX_C Location: 3582367-3582598 bp Feature: domain Description: TfoX_C Location: 3582 367-3582 598 bp Feature: gene Location: 3583308-3584792 bp Ori: QHD77742.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3583710-3584400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3583710-3584400 bp Feature: gene Location: 3584871-3585380 bp Ori: QHD75906.1 Gene: sulA Feature: domain Description: sula Location: 3584877-3585378 bp Feature: domain Description: sula Location: 3584877-3585378 bp Feature: gene Location: 3585733-3586803 bp Ori: QHD75907.1 Gene: ompA Feature: domain Description: PRK10808 Location: 3585736-3586798 bp Feature: domain Description: PRK10808 Location: 3585736-3586798 bp Feature: gene Location: 3747023-3747901 bp Ori: QHD77747.1 Feature: domain Description: Phage_CI_repr Location: 3747050-3747233 bp Feature: domain Description: Phage_CI_repr Location: 3747050-37472 33 bp Feature: domain Description: Phage_CI_repr Location: 3747362-3747554 bp Feature: domain Description: Phage_CI_repr Location: 3747362 -3747554 bp Feature: domain Description: Phage_CI_C Location: 3747581-3747875 bp Feature: domain Description: Phage_CI_C Location: 3747581-3747875 bp Feature: gene Location: 3747913-3748857 bp Feature: gene Location: 3748956-3750440 bp Ori: QHD77748.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3749358-3750048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3749358-3750048 bp Feature: gene Location: 3750859-3751911 bp Ori: QHD76050.1 Feature: domain Description: int Location: 3750862-3751861 bp Feature: domain Description: int Location: 3750862 -3751861 bp Feature: gene Location: 3752034-3752597 bp Ori: QHD76051.1 Feature: domain Description: YbjK Location: 3752040-3752577 bp Feature: domain Description: YbjK Location: 3752 040-3752 577 bp Feature: gene Location: 3835891-3835983 bp Feature: gene Location: 3836161-3838182 bp Ori: QHD76124.1 Gene: uvrB Feature: domain Description: UvrB Location: 3836167-3838168 bp Feature: domain Description: UvrB Location: 3836167-3838168 bp Feature: gene Location: 3838644-3840128 bp Ori: QHD77751.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3839046-3839736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3839046-3839736 bp Feature: gene Location: 3840504-3840716 bp Feature: gene Location: 3840803-3841525 bp Ori: QHD76126.1 Feature: domain Description: LivF Location: 3840806-3841484 bp Feature: domain Description: LivF Location: 3840806-3841484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), Terminase_2 (pfam03592), PHA01972 (structural protein), PHA02515 (hypothetical protein; Provisional), Phage_T7_tail (pfam03906), IclR (pfam01614), PRK15440 (L-rhamnonate dehydratase; Provisional)
MFS_ExuT_GudP_like (cd17319), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), YCCS (TIGR01666), TfoX_N (pfam04993), TfoX_C (pfam04994), sula (TIGR00623), PRK10808 (outer membrane protein A; Reviewed), Phage_CI_repr (pfam07022)
Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226), UvrB (pfam12344), LivF (COG0410)

Seq: CP047193.1 Klebsiella pneumoniae strain Kp36 plasmid unnamed1, complete sequence (219800 bp)
Overview 1 RT 1: 165762-170703 bp Neighborhood of RT #1 [165762, 170703] DDE_Tnp_1_5 HHA RVT-GII INT_Cre_C Feature: gene Location: 165762-166685 bp Feature: domain Description: DDE_Tnp_1_5 Location: 165819-166152 bp Feature: domain Description: DDE_Tnp_1_5 Location: 165819-166152 bp Feature: gene Location: 166840-167094 bp Ori: QHD77954.1 Feature: domain Description: HHA Location: 166891-167074 bp Feature: domain Description: HHA Location: 166891-167074 bp Feature: gene Location: 167612-169096 bp Ori: QHD78006.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168014-168704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168014-168704 bp Feature: gene Location: 169184-170320 bp Ori: QHD77955.1 Feature: domain Description: INT_Cre_C Location: 169607-170261 bp Feature: domain Description: INT_Cre_C Location: 169607-170261 bp Feature: gene Location: 170386-170703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_5 (pfam13737), HHA (pfam05321), RVT-GII, INT_Cre_C (cd00799)

Seq: CP047195.1 Klebsiella pneumoniae strain Kp36 plasmid unnamed3, complete sequence (87117 bp)
Overview 1 RT 1: 27441-32644 bp Neighborhood of RT #1 [27441, 32745] umuC PRK10276 RVT-GII DUF2913 IncFII_repA Feature: gene Location: 27441-28220 bp Ori: QHD78197.1 Feature: domain Description: umuC Location: 27444-28206 bp Feature: domain Description: umuC Location: 274 4 4 -28206 bp Feature: gene Location: 28220-28645 bp Ori: QHD78198.1 Gene: umuD Feature: domain Description: PRK10276 Location: 28271-28631 bp Feature: domain Description: PRK10276 Location: 28271-28631 bp Feature: gene Location: 29050-30534 bp Ori: QHD78259.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29452-30142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294 52-3014 2 bp Feature: gene Location: 30625-31239 bp Ori: QHD78199.1 Feature: domain Description: DUF2913 Location: 30655-31141 bp Feature: domain Description: DUF2913 Location: 30655-3114 1 bp Feature: gene Location: 32146-32745 bp Ori: QHD78260.1 Feature: domain Description: IncFII_repA Location: 32275-32644 bp Feature: domain Description: IncFII_repA Location: 32275-3264 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF2913 (pfam11140), IncFII_repA (pfam02387)