myRT

myRT report for GCA_009856605.1_ASM985660v1

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Seq: CP047242.1 Trichormus variabilis 0441 chromosome, complete genome (6377767 bp)
Overview 1 RT 1: 5359057-5370044 bp Neighborhood of RT #1 [5359057, 5370064] YprA YprA YprA RVT-Retrons AlbA_2 TPR TPR sporadsporadsporadTIGR04255 Feature: gene Location: 5359057-5359983 bp Feature: gene Location: 5359968-5366261 bp Ori: QHD82283.1 Feature: domain Description: YprA Location: 5360061-5361072 bp Feature: domain Description: YprA Location: 5360061 -5361 072 bp Feature: domain Description: YprA Location: 5363163-5363598 bp Feature: domain Description: YprA Location: 53631 63-5363598 bp Feature: domain Description: YprA Location: 5364936-5365233 bp Feature: domain Description: YprA Location: 5364936-5365233 bp Feature: gene Location: 5366279-5367373 bp Ori: QHD82284.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5366462-5367065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5366462-5367065 bp Feature: gene Location: 5367604-5368668 bp Ori: QHD82285.1 Feature: domain Description: AlbA_2 Location: 5367655-5368084 bp Feature: domain Description: AlbA_2 Location: 5367655-5368084 bp Feature: domain Description: TPR Location: 5368195-5368465 bp Feature: domain Description: TPR Location: 53681 95-5368465 bp Feature: domain Description: TPR Location: 5368519-5368600 bp Feature: domain Description: TPR Location: 536851 9-5368600 bp Feature: gene Location: 5369303-5370064 bp Ori: QHD82286.1 Feature: domain Description: sporadsporadsporadTIGR04255 Location: 5369318-5370044 bp Feature: domain Description: sporadsporadsporadTIGR04255 Location: 536931 8-5370044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YprA (COG1205), RVT-Retrons, AlbA_2 (pfam04326), TPR (smart00028), sporadsporadsporadTIGR04255

Seq: CP047244.1 Trichormus variabilis 0441 plasmid unnamed2, complete sequence (293397 bp)
Overview 1 RT 1: 185690-190130 bp Neighborhood of RT #1 [185690, 190144] RVT_N RVT-GII GIIM McrA COG1430 Feature: gene Location: 185690-186025 bp Feature: gene Location: 186119-186298 bp Feature: gene Location: 186325-188091 bp Ori: QHD83924.1 Gene: ltrA Feature: domain Description: RVT_N Location: 186382-186628 bp Feature: domain Description: RVT_N Location: 186382 -18662 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186670-187348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186670-187348 bp Feature: domain Description: GIIM Note: maturase Location: 187450-187681 bp Feature: domain Description: GIIM Note: maturase Location: 187450-187681 bp Feature: domain Description: McrA Location: 187765-188032 bp Feature: domain Description: McrA Location: 187765-188032 bp Feature: gene Location: 188691-189206 bp Feature: gene Location: 189578-190144 bp Ori: QHD83847.1 Feature: domain Description: COG1430 Location: 189770-190130 bp Feature: domain Description: COG1430 Location: 189770-190130 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), COG1430 (Uncharacterized conserved membrane protein, UPF0127 family )

Seq: CP047243.1 Trichormus variabilis 0441 plasmid unnamed1, complete sequence (362032 bp)
Overview 1 RT 1: 31223-38808 bp Neighborhood of RT #1 [31223, 39182] recomb_XerC RVT_N RVT-GII GIIM McrA PRK13541 VirB4_CagE Feature: gene Location: 31223-32185 bp Ori: QHD83404.1 Feature: domain Description: recomb_XerC Location: 31343-32108 bp Feature: domain Description: recomb_XerC Location: 3 13 43 -3 2108 bp Feature: gene Location: 32687-33208 bp Feature: gene Location: 33808-35574 bp Ori: QHD83677.1 Gene: ltrA Feature: domain Description: RVT_N Location: 33865-34111 bp Feature: domain Description: RVT_N Location: 3 3 865-3 4111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34153-34831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4153 -3 483 1 bp Feature: domain Description: GIIM Note: maturase Location: 34933-35164 bp Feature: domain Description: GIIM Note: maturase Location: 3 493 3 -3 5164 bp Feature: domain Description: McrA Location: 35248-35515 bp Feature: domain Description: McrA Location: 3 5248-3 5515 bp Feature: gene Location: 36045-36344 bp Feature: gene Location: 36366-39182 bp Ori: QHD83406.1 Feature: domain Description: PRK13541 Location: 37470-37689 bp Feature: domain Description: PRK13 541 Location: 3 7470-3 7689 bp Feature: domain Description: VirB4_CagE Location: 37824-38808 bp Feature: domain Description: VirB4_CagE Location: 3 7824-3 8808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recomb_XerC (TIGR02224), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK13541 (cytochrome c biogenesis protein CcmA; Provisional), VirB4_CagE (TIGR00929)