myRT

myRT report for GCA_009859815.1_ASM985981v1

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Seq: CP044975.1 Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) chromosome, complete genome (4391519 bp)
Overview 1 RT 1: 854718-858412 bp 2 RT 2: 2401009-2405823 bp 3 RT 3: 3251004-3257160 bp 4 RT 4: 4267721-4275985 bp Neighborhood of RT #1 [854718, 858420] CytC553 CytC553 RVT-GII GIIM DUF1841 YadS Neighborhood of RT #2 [2401009, 2405864] KOG2620 COG3651 RVT-GII GIIM PBP1_ABC_LIVBP_like Neighborhood of RT #3 [3251004, 3257702] MhpC HTH_LUXR PhrB RVT-GII GIIM SrmB Neighborhood of RT #4 [4267721, 4276014] OmpR MFS_AmpG_like RVT_N RVT-GII GIIM HNHc M48C_Oma1_like DUF1631 Feature: gene Location: 854718-855386 bp Ori: QHE75290.1 Feature: domain Description: CytC553 Location: 854748-855090 bp Feature: domain Description: CytC553 Location: 854748-855090 bp Feature: domain Description: CytC553 Location: 855102-855345 bp Feature: domain Description: CytC553 Location: 8551 02-855345 bp Feature: gene Location: 855440-855768 bp Feature: gene Location: 855846-857231 bp Ori: QHE75291.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 856197-856809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8561 97-856809 bp Feature: domain Description: GIIM Note: maturase Location: 856869-857079 bp Feature: domain Description: GIIM Note: maturase Location: 856869-857079 bp Feature: gene Location: 857321-857755 bp Ori: QHE75292.1 Feature: domain Description: DUF1841 Location: 857339-857738 bp Feature: domain Description: DUF1 841 Location: 857339-857738 bp Feature: gene Location: 857782-858420 bp Ori: QHE78291.1 Feature: domain Description: YadS Location: 857824-858412 bp Feature: domain Description: YadS Location: 857824-85841 2 bp Feature: gene Location: 2401009-2401923 bp Ori: QHE76583.1 Feature: domain Description: KOG2620 Location: 2401066-2401909 bp Feature: domain Description: KOG2620 Location: 2401 066-2401 909 bp Feature: gene Location: 2401948-2402340 bp Ori: QHE76584.1 Feature: domain Description: COG3651 Location: 2401960-2402305 bp Feature: domain Description: COG3651 Location: 2401 960-2402305 bp Feature: gene Location: 2402835-2404220 bp Ori: QHE76585.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2403186-2403798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24031 86-2403798 bp Feature: domain Description: GIIM Note: maturase Location: 2403858-2404068 bp Feature: domain Description: GIIM Note: maturase Location: 2403858-2404068 bp Feature: gene Location: 2404298-2404626 bp Feature: gene Location: 2404680-2405864 bp Ori: QHE76586.1 Feature: domain Description: PBP1_ABC_LIVBP_like Location: 2404809-2405823 bp Feature: domain Description: PBP1 _ABC_LIVBP_like Location: 2404809-2405823 bp Feature: gene Location: 3251004-3252092 bp Ori: QHE77259.1 Feature: domain Description: MhpC Location: 3251139-3251850 bp Feature: domain Description: MhpC Location: 3251 1 39-3251 850 bp Feature: domain Description: HTH_LUXR Location: 3251886-3252054 bp Feature: domain Description: HTH_LUXR Location: 3251 886-3252054 bp Feature: gene Location: 3252213-3253739 bp Ori: QHE77260.1 Feature: domain Description: PhrB Location: 3252219-3253599 bp Feature: domain Description: PhrB Location: 325221 9-3253599 bp Feature: gene Location: 3253893-3255278 bp Ori: QHE77261.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3254244-3254856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3254244-3254856 bp Feature: domain Description: GIIM Note: maturase Location: 3254916-3255126 bp Feature: domain Description: GIIM Note: maturase Location: 325491 6-32551 26 bp Feature: gene Location: 3255356-3255684 bp Feature: gene Location: 3255750-3257702 bp Ori: QHE77262.1 Feature: domain Description: SrmB Location: 3255879-3257160 bp Feature: domain Description: SrmB Location: 3255879-32571 60 bp Feature: gene Location: 4267721-4268437 bp Ori: QHE78152.1 Feature: domain Description: OmpR Location: 4267733-4268429 bp Feature: domain Description: OmpR Location: 4267733-4268429 bp Feature: gene Location: 4268538-4269926 bp Ori: QHE78153.1 Feature: domain Description: MFS_AmpG_like Location: 4268652-4269888 bp Feature: domain Description: MFS_AmpG_like Location: 4268652-4269888 bp Feature: gene Location: 4270973-4272724 bp Ori: QHE78154.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4271030-4271273 bp Feature: domain Description: RVT_N Location: 4271 030-4271 273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4271318-4271966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4271 31 8-4271 966 bp Feature: domain Description: GIIM Note: maturase Location: 4272017-4272251 bp Feature: domain Description: GIIM Note: maturase Location: 427201 7-4272251 bp Feature: domain Description: HNHc Note: nucleases Location: 4272461-4272632 bp Feature: domain Description: HNHc Note: nucleases Location: 4272461 -4272632 bp Feature: gene Location: 4272800-4273678 bp Ori: QHE78155.1 Feature: domain Description: M48C_Oma1_like Location: 4273100-4273643 bp Feature: domain Description: M48C_Oma1 _like Location: 42731 00-4273643 bp Feature: gene Location: 4273687-4276014 bp Ori: QHE78156.1 Feature: domain Description: DUF1631 Location: 4273702-4275985 bp Feature: domain Description: DUF1 631 Location: 4273702-4275985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CytC553 (COG2863), RVT-GII, GIIM (pfam08388), DUF1841 (pfam08897), YadS (COG2860), KOG2620 (KOG2620, Prohibitins and stomatins of the PID superfamily ), COG3651 (Uncharacterized conserved protein, DUF2237 family ), PBP1_ABC_LIVBP_like, MhpC (COG0596), HTH_LUXR (smart00421)
PhrB (COG0415), SrmB (COG0513), OmpR (COG0745), MFS_AmpG_like (cd17486), RVT_N (pfam13655), HNHc (smart00507), M48C_Oma1_like (cd07342), DUF1631 (pfam07793)