myRT

myRT report for GCA_009859915.1_ASM985991v1

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Seq: CP046573.1 Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence (991117 bp)
Overview 1 RT 1: 38214-43811 bp Neighborhood of RT #1 [38214, 43816] COG3905 DDE_5 RVT-GII GIIM IclR mhpD Feature: gene Location: 38214-38528 bp Ori: QHE72605.1 Feature: domain Description: COG3905 Location: 38412-38520 bp Feature: domain Description: COG3905 Location: 3841 2-38520 bp Feature: gene Location: 38819-40357 bp Ori: QHE72606.1 Feature: domain Description: DDE_5 Location: 38912-39695 bp Feature: domain Description: DDE_5 Location: 3891 2-39695 bp Feature: gene Location: 40350-41423 bp Ori: QHE72607.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40368-41034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40368-41 034 bp Feature: domain Description: GIIM Note: maturase Location: 41127-41343 bp Feature: domain Description: GIIM Note: maturase Location: 41 1 27-41 343 bp Feature: gene Location: 42079-42891 bp Ori: QHE72608.1 Feature: domain Description: IclR Location: 42151-42838 bp Feature: domain Description: IclR Location: 421 51 -42838 bp Feature: gene Location: 42998-43816 bp Ori: QHE72609.1 Gene: bphE Feature: domain Description: mhpD Location: 43043-43811 bp Feature: domain Description: mhpD Location: 43043-4381 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3905 (Predicted transcriptional regulator ), DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), IclR (pfam01614), mhpD (PRK11342)

Seq: CP046572.1 Rhodococcus sp. WAY2 chromosome, complete genome (6622033 bp)
Overview 1 RT 1: 507600-512320 bp Neighborhood of RT #1 [507600, 512346] CzcO AcrR RVT-Retrons PLDc_N SRPBCC_7 Feature: gene Location: 507600-509138 bp Ori: QHE67013.1 Feature: domain Description: CzcO Location: 507648-508974 bp Feature: domain Description: CzcO Location: 507648-508974 bp Feature: gene Location: 509284-509943 bp Ori: QHE67014.1 Feature: domain Description: AcrR Location: 509341-509839 bp Feature: domain Description: AcrR Location: 509341-509839 bp Feature: gene Location: 510231-511442 bp Ori: QHE67015.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 510615-511209 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 510615-5112 09 bp Feature: gene Location: 511528-511812 bp Ori: QHE67016.1 Feature: domain Description: PLDc_N Location: 511558-511693 bp Feature: domain Description: PLDc_N Location: 511558-511693 bp Feature: gene Location: 511837-512346 bp Ori: QHE67017.1 Feature: domain Description: SRPBCC_7 Location: 511882-512320 bp Feature: domain Description: SRPBCC_7 Location: 511882 -512 32 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CzcO (COG2072), AcrR (COG1309), RVT-Retrons, PLDc_N (pfam13396), SRPBCC_7 (cd07825)

Seq: CP046574.1 Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence (461378 bp)
Overview 1 RT 1: 117038-120955 bp 2 RT 2: 309223-312986 bp 3 RT 3: 328090-338123 bp 4 RT 4: 422110-427387 bp Neighborhood of RT #1 [117038, 121591] DDE_Tnp_1_4 RVT_N RVT-GII GIIM InsE HTH_21 Neighborhood of RT #2 [309223, 313003] RVT-GII GIIM ahpD Neighborhood of RT #3 [328090, 338164] RVT_N RVT-GII COG4584 IstB_IS21 RVT-GII GIIM RVT_N RVT-GII COG3464 Neighborhood of RT #4 [422110, 427428] COG3547 DEDD_Tnp_IS110 RVT-GII GIIM PaaI_thioesterase ttLC_FACS_AlkK_like Feature: gene Location: 117038-117223 bp Feature: gene Location: 117280-117909 bp Ori: QHE73770.1 Feature: domain Description: DDE_Tnp_1_4 Location: 117298-117718 bp Feature: domain Description: DDE_Tnp_1_4 Location: 117298-117718 bp Feature: gene Location: 118016-119809 bp Ori: QHE73771.1 Feature: domain Description: RVT_N Location: 118106-118349 bp Feature: domain Description: RVT_N Location: 118106-1183 49 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118403-119060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118403 -119060 bp Feature: domain Description: GIIM Note: maturase Location: 119111-119345 bp Feature: domain Description: GIIM Note: maturase Location: 119111-1193 45 bp Feature: gene Location: 120368-120688 bp Ori: QHE73772.1 Feature: domain Description: InsE Location: 120386-120683 bp Feature: domain Description: InsE Location: 1203 86-120683 bp Feature: gene Location: 120742-121591 bp Feature: domain Description: HTH_21 Location: 120838-120955 bp Feature: domain Description: HTH_21 Location: 12083 8-120955 bp Feature: gene Location: 309223-309339 bp Feature: gene Location: 309338-309484 bp Feature: gene Location: 309629-310999 bp Ori: QHE73973.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309944-310571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 09944-3 10571 bp Feature: domain Description: GIIM Note: maturase Location: 310658-310871 bp Feature: domain Description: GIIM Note: maturase Location: 3 10658-3 10871 bp Feature: gene Location: 311793-311912 bp Feature: gene Location: 312464-313003 bp Ori: QHE73975.1 Gene: ahpD Feature: domain Description: ahpD Location: 312473-312986 bp Feature: domain Description: ahpD Location: 3 12473 -3 12986 bp Feature: gene Location: 328090-328347 bp Feature: gene Location: 328344-329711 bp Feature: gene Location: 330570-331049 bp Ori: QHE73991.1 Feature: domain Description: RVT_N Location: 330660-330903 bp Feature: domain Description: RVT_N Location: 3 3 0660-3 3 0903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330957-331020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 0957-3 3 1020 bp Feature: gene Location: 331178-332872 bp Ori: QHE73992.1 Feature: domain Description: COG4584 Location: 331703-332144 bp Feature: domain Description: COG4584 Location: 3 3 1703 -3 3 2144 bp Feature: gene Location: 332869-333681 bp Ori: QHE73993.1 Feature: domain Description: IstB_IS21 Location: 333076-333592 bp Feature: domain Description: IstB_IS21 Location: 3 3 3 076-3 3 3 592 bp Feature: gene Location: 333748-335100 bp Ori: QHE73994.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333754-334351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 3 754-3 3 43 51 bp Feature: domain Description: GIIM Note: maturase Location: 334402-334636 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 4402-3 3 463 6 bp Feature: gene Location: 335931-336938 bp Ori: QHE73995.1 Feature: domain Description: RVT_N Location: 335979-336216 bp Feature: domain Description: RVT_N Location: 3 3 5979-3 3 6216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336276-336882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 6276-3 3 6882 bp Feature: gene Location: 337071-337244 bp Feature: gene Location: 337241-338164 bp Ori: QHE73997.1 Feature: domain Description: COG3464 Location: 337289-338123 bp Feature: domain Description: COG3 464 Location: 3 3 7289-3 3 8123 bp Feature: gene Location: 422110-423159 bp Ori: QHE74085.1 Feature: domain Description: COG3547 Location: 422119-423100 bp Feature: domain Description: COG3 547 Location: 422119-423 100 bp Feature: gene Location: 423130-424113 bp Ori: QHE74086.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 423385-423676 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 423 3 85-423 676 bp Feature: gene Location: 424322-424981 bp Ori: QHE74087.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424325-424544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4243 25-424544 bp Feature: domain Description: GIIM Note: maturase Location: 424640-424853 bp Feature: domain Description: GIIM Note: maturase Location: 424640-424853 bp Feature: gene Location: 425173-425739 bp Ori: QHE74088.1 Feature: domain Description: PaaI_thioesterase Location: 425395-425692 bp Feature: domain Description: PaaI_thioesterase Location: 4253 95-425692 bp Feature: gene Location: 425797-427428 bp Ori: QHE74089.1 Gene: fadD Feature: domain Description: ttLC_FACS_AlkK_like Location: 425842-427387 bp Feature: domain Description: ttLC_FACS_AlkK_like Location: 425842-4273 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_21 (pfam13276), ahpD (TIGR00777), COG4584 (Transposase ), IstB_IS21 (pfam01695), COG3464 (Transposase )
COG3547 (Transposase ), DEDD_Tnp_IS110 (pfam01548), PaaI_thioesterase (cd03443), ttLC_FACS_AlkK_like (cd12119)