myRT

myRT report for GCA_009866725.1_ASM986672v1

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Seq: CP019397.1 Pseudomonas sp. S19 chromosome, complete genome (6098674 bp)
Overview 1 RT 1: 2237277-2242210 bp 2 RT 2: 2296807-2301764 bp 3 RT 3: 3860418-3866611 bp 4 RT 4: 5012942-5025418 bp Neighborhood of RT #1 [2237277, 2242233] RVT_N RVT-GII YkfC LysR M20_Acy1-like Neighborhood of RT #2 [2296807, 2301793] HisM HisM RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #3 [3860418, 3866706] DUF4123 RVT_N RVT-GII YkfC HTH_Tnp_1 HTH_Tnp_1 Neighborhood of RT #4 [5012942, 5025418] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 dnaG RVT-UG25 Feature: gene Location: 2237277-2237509 bp Feature: gene Location: 2237914-2238162 bp Feature: gene Location: 2238159-2239820 bp Ori: QHF33218.1 Feature: domain Description: RVT_N Location: 2238204-2238447 bp Feature: domain Description: RVT_N Location: 2238204-2238447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2238492-2239125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2238492-22391 25 bp Feature: domain Description: YkfC Location: 2239125-2239488 bp Feature: domain Description: YkfC Location: 22391 25-2239488 bp Feature: gene Location: 2239975-2240913 bp Ori: QHF36545.1 Feature: domain Description: LysR Location: 2239978-2240863 bp Feature: domain Description: LysR Location: 2239978-2240863 bp Feature: gene Location: 2241040-2242233 bp Ori: QHF36546.1 Feature: domain Description: M20_Acy1-like Location: 2241088-2242210 bp Feature: domain Description: M20_Acy1 -like Location: 2241 088-224221 0 bp Feature: gene Location: 2296807-2297475 bp Ori: QHF33260.1 Feature: domain Description: HisM Location: 2296819-2297449 bp Feature: domain Description: HisM Location: 229681 9-2297449 bp Feature: gene Location: 2297478-2297870 bp Ori: QHF33261.1 Feature: domain Description: HisM Location: 2297481-2297865 bp Feature: domain Description: HisM Location: 2297481 -2297865 bp Feature: gene Location: 2297966-2299762 bp Ori: QHF33262.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2298680-2299370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2298680-2299370 bp Feature: gene Location: 2299848-2301374 bp Ori: QHF33263.1 Feature: domain Description: LZ_Tnp_IS66 Location: 2299977-2300187 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2299977-23001 87 bp Feature: domain Description: zf-IS66 Location: 2300214-2300340 bp Feature: domain Description: zf-IS66 Location: 230021 4-2300340 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2300382-2301225 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2300382-2301 225 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2301246-2301357 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2301 246-2301 357 bp Feature: gene Location: 2301458-2301793 bp Ori: QHF33264.1 Feature: domain Description: TnpB_IS66 Location: 2301476-2301764 bp Feature: domain Description: TnpB_IS66 Location: 2301 476-2301 764 bp Feature: gene Location: 3860418-3861284 bp Ori: QHF34534.1 Feature: domain Description: DUF4123 Location: 3860478-3860814 bp Feature: domain Description: DUF41 23 Location: 3860478-386081 4 bp Feature: gene Location: 3861281-3863782 bp Feature: gene Location: 3863898-3865559 bp Ori: QHF34535.1 Feature: domain Description: RVT_N Location: 3863943-3864186 bp Feature: domain Description: RVT_N Location: 3863943-38641 86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3864231-3864864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3864231 -3864864 bp Feature: domain Description: YkfC Location: 3864864-3865227 bp Feature: domain Description: YkfC Location: 3864864-3865227 bp Feature: gene Location: 3865556-3865804 bp Feature: gene Location: 3866206-3866706 bp Ori: QHF34536.1 Feature: domain Description: HTH_Tnp_1 Location: 3866218-3866368 bp Feature: domain Description: HTH_Tnp_1 Location: 386621 8-3866368 bp Feature: domain Description: HTH_Tnp_1 Location: 3866383-3866611 bp Feature: domain Description: HTH_Tnp_1 Location: 3866383-386661 1 bp Feature: gene Location: 5012942-5014474 bp Ori: QHF35513.1 Feature: domain Description: LZ_Tnp_IS66 Location: 5013047-5013260 bp Feature: domain Description: LZ_Tnp_IS66 Location: 501 3047-501 3260 bp Feature: domain Description: zf-IS66 Location: 5013290-5013413 bp Feature: domain Description: zf-IS66 Location: 501 3290-501 341 3 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5013458-5014313 bp Feature: domain Description: DDE_Tnp_IS66 Location: 501 3458-501 431 3 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5014334-5014448 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 501 4334-501 4448 bp Feature: gene Location: 5014493-5014852 bp Ori: QHF35514.1 Feature: domain Description: TnpB_IS66 Location: 5014523-5014817 bp Feature: domain Description: TnpB_IS66 Location: 501 4523-501 481 7 bp Feature: gene Location: 5015083-5022609 bp Ori: QHF35515.1 Feature: domain Description: dnaG Location: 5015101-5016313 bp Feature: domain Description: dnaG Location: 501 51 01 -501 631 3 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 5017105-5017678 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 501 71 05-501 7678 bp Feature: gene Location: 5023732-5024436 bp Feature: gene Location: 5024777-5025418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), LysR (COG0583), M20_Acy1-like (cd08660), HisM (COG0765), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
TnpB_IS66 (pfam05717), DUF4123 (pfam13503), HTH_Tnp_1 (pfam01527), dnaG (TIGR01391), RVT-UG25