myRT

myRT report for GCA_009866745.1_ASM986674v1

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Seq: CP019398.1 Pseudomonas sp. S34 chromosome, complete genome (6269896 bp)
Overview 1 RT 1: 1528345-1535443 bp 2 RT 2: 2656137-2661287 bp 3 RT 3: 4171860-4175685 bp Neighborhood of RT #1 [1528345, 1535451] CAP_ED PtrB RVT_N RVT-GII GIIM HNH GATase_4 Neighborhood of RT #2 [2656137, 2661313] DoxX ALDH_F18-19_ProA-GPR RVT-GII EpmB MATE_NorM_like Neighborhood of RT #3 [4171860, 4175732] clpP tig RVT_N RVT-GII GIIM HNH Feature: gene Location: 1528345-1528818 bp Ori: QHF37979.1 Feature: domain Description: CAP_ED Location: 1528405-1528744 bp Feature: domain Description: CAP_ED Location: 1 528405-1 528744 bp Feature: gene Location: 1529027-1531081 bp Ori: QHF37980.1 Feature: domain Description: PtrB Location: 1529054-1531073 bp Feature: domain Description: PtrB Location: 1 529054-1 531 073 bp Feature: gene Location: 1532352-1534049 bp Ori: QHF37981.1 Feature: domain Description: RVT_N Location: 1532409-1532652 bp Feature: domain Description: RVT_N Location: 1 532409-1 532652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532697-1533333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 532697-1 533333 bp Feature: domain Description: GIIM Note: maturase Location: 1533384-1533618 bp Feature: domain Description: GIIM Note: maturase Location: 1 533384-1 53361 8 bp Feature: domain Description: HNH Note: nucleases Location: 1533870-1534008 bp Feature: domain Description: HNH Note: nucleases Location: 1 533870-1 534008 bp Feature: gene Location: 1534145-1534642 bp Feature: gene Location: 1534675-1535451 bp Ori: QHF37983.1 Feature: domain Description: GATase_4 Location: 1534678-1535443 bp Feature: domain Description: GATase_4 Location: 1 534678-1 535443 bp Feature: gene Location: 2656137-2656643 bp Ori: QHF38971.1 Feature: domain Description: DoxX Location: 2656191-2656623 bp Feature: domain Description: DoxX Location: 26561 91 -2656623 bp Feature: gene Location: 2657047-2658549 bp Ori: QHF38972.1 Feature: domain Description: ALDH_F18-19_ProA-GPR Location: 2657233-2658445 bp Feature: domain Description: ALDH_F1 8-1 9_ProA-GPR Location: 2657233-2658445 bp Feature: gene Location: 2658939-2659178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2658942-2659146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2658942-26591 46 bp Feature: gene Location: 2659444-2659926 bp Feature: domain Description: EpmB Location: 2659450-2659747 bp Feature: domain Description: EpmB Location: 2659450-2659747 bp Feature: gene Location: 2659973-2661313 bp Ori: QHF38973.1 Feature: domain Description: MATE_NorM_like Location: 2659982-2661287 bp Feature: domain Description: MATE_NorM_like Location: 2659982-2661 287 bp Feature: gene Location: 4171860-4172495 bp Ori: QHF40210.1 Feature: domain Description: clpP Location: 4171914-4172487 bp Feature: domain Description: clpP Location: 41 71 91 4-41 72487 bp Feature: gene Location: 4172589-4173899 bp Ori: QHF40211.1 Feature: domain Description: tig Location: 4172592-4173870 bp Feature: domain Description: tig Location: 41 72592-41 73870 bp Feature: gene Location: 4174029-4175732 bp Ori: QHF40212.1 Feature: domain Description: RVT_N Location: 4174086-4174323 bp Feature: domain Description: RVT_N Location: 41 74086-41 74323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4174374-4175010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 74374-41 7501 0 bp Feature: domain Description: GIIM Note: maturase Location: 4175061-4175295 bp Feature: domain Description: GIIM Note: maturase Location: 41 75061 -41 75295 bp Feature: domain Description: HNH Note: nucleases Location: 4175547-4175685 bp Feature: domain Description: HNH Note: nucleases Location: 41 75547-41 75685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CAP_ED (cl00047), PtrB (COG1770), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), GATase_4 (pfam13230), DoxX (pfam07681), ALDH_F18-19_ProA-GPR (cd07079), EpmB (COG1509)
MATE_NorM_like (cd13137), clpP, tig (TIGR00115)