myRT

myRT report for GCA_009866945.1_ASM986694v1

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Seq: CP026932.1 Escherichia coli strain CFS3273 chromosome, complete genome (5123214 bp)
Overview 1 RT 1: 632781-636541 bp 2 RT 2: 1207479-1214984 bp 3 RT 3: 1227896-1231510 bp 4 RT 4: 1643149-1646557 bp 5 RT 5: 2643577-2648615 bp 6 RT 6: 4555370-4558957 bp Neighborhood of RT #1 [632781, 636543] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [1207479, 1215381] PRK09678 RVT-Retrons Arm-DNA-bind_3 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [1227896, 1231677] YkfC InsG RVT-GII GIIM PHA02517 COG2085 Neighborhood of RT #4 [1643149, 1646957] SH3_2 SH3_2 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #5 [2643577, 2649012] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4555370, 4559354] CobW_C PHA02517 RVT-GII GIIM InsE Feature: gene Location: 632781-633520 bp Feature: domain Description: InsE Location: 632784-633123 bp Feature: domain Description: InsE Location: 632784-6331 23 bp Feature: gene Location: 633513-633884 bp Feature: gene Location: 634178-635701 bp Ori: QHF71562.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634451-635183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634451 -6351 83 bp Feature: domain Description: GIIM Note: maturase Location: 635258-635456 bp Feature: domain Description: GIIM Note: maturase Location: 635258-635456 bp Feature: gene Location: 635791-636264 bp Feature: domain Description: PHA02517 Location: 635797-636262 bp Feature: domain Description: PHA0251 7 Location: 635797-636262 bp Feature: gene Location: 636307-636543 bp Feature: domain Description: DUF1016_N Location: 636364-636541 bp Feature: domain Description: DUF1 01 6_N Location: 636364-636541 bp Feature: gene Location: 1207479-1207751 bp Ori: QHF72094.1 Feature: domain Description: PRK09678 Location: 1207488-1207644 bp Feature: domain Description: PRK09678 Location: 1 207488-1 207644 bp Feature: gene Location: 1208397-1209365 bp Feature: gene Location: 1209367-1210299 bp Ori: QHF72096.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1209469-1210063 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 209469-1 21 0063 bp Feature: gene Location: 1210754-1211895 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1210763-1211015 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 21 0763-1 21 1 01 5 bp Feature: gene Location: 1211898-1212371 bp Feature: domain Description: PHA02517 Location: 1211904-1212369 bp Feature: domain Description: PHA0251 7 Location: 1 21 1 904-1 21 2369 bp Feature: gene Location: 1212461-1213984 bp Ori: QHF72097.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1212734-1213466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 2734-1 21 3466 bp Feature: domain Description: GIIM Note: maturase Location: 1213541-1213739 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 3541 -1 21 3739 bp Feature: gene Location: 1214278-1214649 bp Feature: gene Location: 1214642-1215381 bp Feature: domain Description: InsE Location: 1214645-1214984 bp Feature: domain Description: InsE Location: 1 21 4645-1 21 4984 bp Feature: gene Location: 1227896-1228051 bp Ori: QHF72111.1 Feature: domain Description: YkfC Location: 1227905-1228046 bp Feature: domain Description: YkfC Location: 1 227905-1 228046 bp Feature: gene Location: 1228218-1229330 bp Ori: QHF72112.1 Feature: domain Description: InsG Location: 1228221-1229259 bp Feature: domain Description: InsG Location: 1 228221 -1 229259 bp Feature: gene Location: 1229387-1230769 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1229519-1230251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 22951 9-1 230251 bp Feature: domain Description: GIIM Note: maturase Location: 1230326-1230524 bp Feature: domain Description: GIIM Note: maturase Location: 1 230326-1 230524 bp Feature: gene Location: 1230850-1231337 bp Feature: domain Description: PHA02517 Location: 1230853-1231024 bp Feature: domain Description: PHA0251 7 Location: 1 230853-1 231 024 bp Feature: gene Location: 1231264-1231677 bp Ori: QHF72113.1 Feature: domain Description: COG2085 Location: 1231363-1231510 bp Feature: domain Description: COG2085 Location: 1 231 363-1 231 51 0 bp Feature: gene Location: 1643149-1643431 bp Feature: domain Description: SH3_2 Location: 1643164-1643227 bp Feature: domain Description: SH3_2 Location: 1 6431 64-1 643227 bp Feature: domain Description: SH3_2 Location: 1643257-1643374 bp Feature: domain Description: SH3_2 Location: 1 643257-1 643374 bp Feature: gene Location: 1643474-1643947 bp Feature: domain Description: PHA02517 Location: 1643480-1643945 bp Feature: domain Description: PHA0251 7 Location: 1 643480-1 643945 bp Feature: gene Location: 1644037-1645560 bp Ori: QHF72473.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1644310-1645042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 64431 0-1 645042 bp Feature: domain Description: GIIM Note: maturase Location: 1645117-1645315 bp Feature: domain Description: GIIM Note: maturase Location: 1 6451 1 7-1 64531 5 bp Feature: gene Location: 1645854-1646225 bp Feature: gene Location: 1646218-1646957 bp Feature: domain Description: InsE Location: 1646221-1646557 bp Feature: domain Description: InsE Location: 1 646221 -1 646557 bp Feature: gene Location: 2643577-2645487 bp Feature: gene Location: 2645529-2646002 bp Feature: domain Description: PHA02517 Location: 2645535-2646000 bp Feature: domain Description: PHA0251 7 Location: 2645535-2646000 bp Feature: gene Location: 2646092-2647615 bp Ori: QHF73412.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646365-2647097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2646365-2647097 bp Feature: domain Description: GIIM Note: maturase Location: 2647172-2647370 bp Feature: domain Description: GIIM Note: maturase Location: 26471 72-2647370 bp Feature: gene Location: 2647909-2648280 bp Feature: gene Location: 2648273-2649012 bp Feature: domain Description: InsE Location: 2648276-2648615 bp Feature: domain Description: InsE Location: 2648276-264861 5 bp Feature: gene Location: 4555370-4555749 bp Feature: domain Description: CobW_C Location: 4555373-4555481 bp Feature: domain Description: CobW_C Location: 4555373-4555481 bp Feature: gene Location: 4555871-4556344 bp Feature: domain Description: PHA02517 Location: 4555877-4556342 bp Feature: domain Description: PHA0251 7 Location: 4555877-4556342 bp Feature: gene Location: 4556434-4557957 bp Ori: QHF75123.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4556707-4557439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4556707-4557439 bp Feature: domain Description: GIIM Note: maturase Location: 4557514-4557712 bp Feature: domain Description: GIIM Note: maturase Location: 455751 4-455771 2 bp Feature: gene Location: 4558251-4558622 bp Feature: gene Location: 4558615-4559354 bp Feature: domain Description: InsE Location: 4558618-4558957 bp Feature: domain Description: InsE Location: 455861 8-4558957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356), YkfC (COG3344), InsG (COG3385)
COG2085 (Predicted dinucleotide-binding enzyme ), SH3_2 (pfam07653), CobW_C (smart00833)

Seq: CP026934.1 Escherichia coli strain CFS3273 plasmid pCFS3273-2, complete sequence (145001 bp)
Overview 1 RT 1: 13816-17878 bp Neighborhood of RT #1 [13816, 17880] PHA02517 RVT-GII GIIM Rve PRK15442 Feature: gene Location: 13816-14016 bp Feature: domain Description: PHA02517 Location: 13819-14017 bp Feature: domain Description: PHA02 517 Location: 13819-14017 bp Feature: gene Location: 14009-14380 bp Feature: gene Location: 14674-15984 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14947-15679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14947-15679 bp Feature: domain Description: GIIM Note: maturase Location: 15754-15952 bp Feature: domain Description: GIIM Note: maturase Location: 15754-15952 bp Feature: gene Location: 16038-16742 bp Ori: QHF76125.1 Feature: domain Description: Rve Location: 16041-16686 bp Feature: domain Description: Rve Location: 16041-16686 bp Feature: gene Location: 17020-17880 bp Ori: QHF76126.1 Gene: blaTEM Feature: domain Description: PRK15442 Location: 17029-17878 bp Feature: domain Description: PRK15442 Location: 1702 9-17878 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Rve (COG3316), PRK15442 (beta-lactamase TEM; Provisional)

Seq: CP026933.1 Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence (268664 bp)
Overview 1 RT 1: 152142-155229 bp Neighborhood of RT #1 [152142, 155638] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 152142-152243 bp Feature: gene Location: 152209-152691 bp Feature: domain Description: PHA02517 Location: 152227-152665 bp Feature: domain Description: PHA02517 Location: 152227-152665 bp Feature: gene Location: 152760-154283 bp Ori: QHF75980.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153033-153765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 153 03 3 -153 765 bp Feature: domain Description: GIIM Note: maturase Location: 153840-154038 bp Feature: domain Description: GIIM Note: maturase Location: 153 840-15403 8 bp Feature: gene Location: 154577-154981 bp Feature: gene Location: 154932-155638 bp Feature: domain Description: InsE Location: 154956-155229 bp Feature: domain Description: InsE Location: 154956-155229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)