myRT

myRT report for GCA_009867015.2_ASM986701v2

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Seq: CP026937.1 Escherichia coli strain CFS3292 plasmid pCFS3292-2, complete sequence (131954 bp)
Overview 1 RT 1: 112082-117296 bp Neighborhood of RT #1 [112082, 117304] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 APH Feature: gene Location: 112082-113233 bp Ori: QHF81568.1 Feature: domain Description: HTH_38 Location: 112091-112205 bp Feature: domain Description: HTH_38 Location: 1 1 2091 -1 1 2205 bp Feature: domain Description: Tra8 Location: 112241-113222 bp Feature: domain Description: Tra8 Location: 1 1 2241 -1 1 3222 bp Feature: gene Location: 113330-113740 bp Ori: QHF81569.1 Feature: domain Description: PHA02517 Location: 113357-113675 bp Feature: domain Description: PHA0251 7 Location: 1 1 3357-1 1 3675 bp Feature: gene Location: 114347-115855 bp Ori: QHF81571.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114605-115337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4605-1 1 5337 bp Feature: domain Description: GIIM Note: maturase Location: 115412-115610 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 541 2-1 1 561 0 bp Feature: gene Location: 115936-116394 bp Feature: domain Description: PHA02517 Location: 115939-116386 bp Feature: domain Description: PHA0251 7 Location: 1 1 5939-1 1 6386 bp Feature: gene Location: 116501-117304 bp Ori: QHF81572.1 Gene: aph(3'')-Ib Feature: domain Description: APH Location: 116543-117296 bp Feature: domain Description: APH Location: 1 1 6543-1 1 7296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), APH (pfam01636)

Seq: CP026935.2 Escherichia coli strain CFS3292 chromosome, complete genome (5133979 bp)
Overview 1 RT 1: 872507-876794 bp 2 RT 2: 3974174-3979906 bp Neighborhood of RT #1 [872507, 876794] InsE PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [3974174, 3979917] T5orf172 PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Feature: gene Location: 872507-872932 bp Ori: QHF77108.1 Feature: domain Description: InsE Location: 872522-872912 bp Feature: domain Description: InsE Location: 872 52 2 -872 912 bp Feature: gene Location: 873104-873592 bp Feature: domain Description: PHA02517 Location: 873107-873557 bp Feature: domain Description: PHA02 517 Location: 873107-873557 bp Feature: gene Location: 873673-875181 bp Ori: QHF77109.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873931-874663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873931-874663 bp Feature: domain Description: GIIM Note: maturase Location: 874738-874936 bp Feature: domain Description: GIIM Note: maturase Location: 874738-874936 bp Feature: gene Location: 875854-876587 bp Feature: domain Description: InsE Location: 875893-876187 bp Feature: domain Description: InsE Location: 875893-876187 bp Feature: gene Location: 876625-876794 bp Feature: gene Location: 3974174-3975352 bp Ori: QHF79970.1 Feature: domain Description: T5orf172 Location: 3975017-3975281 bp Feature: domain Description: T5orf172 Location: 3975017-39752 81 bp Feature: gene Location: 3975581-3976069 bp Feature: domain Description: PHA02517 Location: 3975584-3976058 bp Feature: domain Description: PHA02 517 Location: 3975584-3976058 bp Feature: gene Location: 3976150-3977658 bp Ori: QHF79971.2 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3976408-3977140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3976408-3977140 bp Feature: domain Description: GIIM Note: maturase Location: 3977215-3977413 bp Feature: domain Description: GIIM Note: maturase Location: 39772 15-3977413 bp Feature: gene Location: 3978331-3978756 bp Feature: domain Description: PHA02517 Location: 3978421-3978757 bp Feature: domain Description: PHA02 517 Location: 397842 1-3978757 bp Feature: gene Location: 3978766-3979917 bp Ori: QHF79973.1 Feature: domain Description: HTH_38 Location: 3978775-3978889 bp Feature: domain Description: HTH_38 Location: 3978775-3978889 bp Feature: domain Description: Tra8 Location: 3978925-3979906 bp Feature: domain Description: Tra8 Location: 397892 5-3979906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), T5orf172 (smart00974), HTH_38 (pfam13936), Tra8 (COG2826)