myRT

myRT report for GCA_009873495.1_ASM987349v1

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Seq: CP046704.1 Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence (337072 bp)
Overview 1 RT 1: 36004-40523 bp Neighborhood of RT #1 [36004, 40523] RVT_N RVT-GII GIIM McrA HTH_XRE Feature: gene Location: 36004-36660 bp Feature: gene Location: 36577-36798 bp Feature: gene Location: 36845-38386 bp Ori: QHG20234.1 Feature: domain Description: RVT_N Location: 36881-37121 bp Feature: domain Description: RVT_N Location: 36881 -371 21 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37178-37805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 78-37805 bp Feature: domain Description: GIIM Note: maturase Location: 37862-38051 bp Feature: domain Description: GIIM Note: maturase Location: 37862-38051 bp Feature: domain Description: McrA Location: 38054-38360 bp Feature: domain Description: McrA Location: 38054-38360 bp Feature: gene Location: 39167-39403 bp Ori: QHG20447.1 Feature: domain Description: HTH_XRE Location: 39221-39383 bp Feature: domain Description: HTH_XRE Location: 39221 -39383 bp Feature: gene Location: 39555-40523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), HTH_XRE (smart00530)

Seq: CP046703.1 Nostoc sp. ATCC 53789 chromosome, complete genome (7340101 bp)
Overview 1 RT 1: 657551-665291 bp 2 RT 2: 857896-868807 bp 3 RT 3: 3599157-3603096 bp 4 RT 4: 4509555-4515332 bp 5 RT 5: 4974056-4979423 bp Neighborhood of RT #1 [657551, 665305] PinE Zn_ribbon_recom RVT-GII GIIM McrA CheA CheA GAF MCP_signal Neighborhood of RT #2 [857896, 868842] DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 RVT-Retrons TraX Neighborhood of RT #3 [3599157, 3603107] SRPBCC_4 RVT-Retrons OmpR Neighborhood of RT #4 [4509555, 4515332] pgi Nif11 Nif11 RVT-Retrons AlbA_2 TPR TPR Neighborhood of RT #5 [4974056, 4979431] cysS YejR RVT-GII TM_helix TM_helix TM_helix TM_helix TM_helix Polyketide_cyc2 Feature: gene Location: 657551-657768 bp Feature: gene Location: 657783-659831 bp Ori: QHG14951.1 Feature: domain Description: PinE Location: 657825-658509 bp Feature: domain Description: PinE Location: 65782 5-658509 bp Feature: domain Description: Zn_ribbon_recom Location: 658767-658926 bp Feature: domain Description: Zn_ribbon_recom Location: 658767-65892 6 bp Feature: gene Location: 660215-661225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660218-660641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6602 18-660641 bp Feature: domain Description: GIIM Note: maturase Location: 660698-660896 bp Feature: domain Description: GIIM Note: maturase Location: 660698-660896 bp Feature: domain Description: McrA Location: 660905-661205 bp Feature: domain Description: McrA Location: 660905-6612 05 bp Feature: gene Location: 661663-663888 bp Ori: QHG14952.1 Feature: domain Description: CheA Location: 661702-662167 bp Feature: domain Description: CheA Location: 661702 -662 167 bp Feature: domain Description: CheA Location: 662521-663880 bp Feature: domain Description: CheA Location: 662 52 1-663880 bp Feature: gene Location: 664058-665305 bp Ori: QHG14953.1 Feature: domain Description: GAF Location: 664352-664766 bp Feature: domain Description: GAF Location: 664352 -664766 bp Feature: domain Description: MCP_signal Location: 664835-665291 bp Feature: domain Description: MCP_signal Location: 664835-6652 91 bp Feature: gene Location: 857896-862821 bp Ori: QHG15109.1 Feature: domain Description: DUF4011 Location: 857965-858448 bp Feature: domain Description: DUF4011 Location: 857965-858448 bp Feature: domain Description: DEXXQc_SF1 Location: 858775-859468 bp Feature: domain Description: DEXXQc_SF1 Location: 858775-859468 bp Feature: domain Description: DEXXQc_SF1 Location: 861076-861838 bp Feature: domain Description: DEXXQc_SF1 Location: 861076-861838 bp Feature: domain Description: KOG1803 Location: 861991-862429 bp Feature: domain Description: KOG1803 Location: 861991-862 42 9 bp Feature: domain Description: MTES_1575 Location: 862504-862795 bp Feature: domain Description: MTES_1575 Location: 862 504-862 795 bp Feature: gene Location: 862893-864428 bp Ori: QHG15110.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 862926-863076 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 862 92 6-863076 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 863325-863433 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 86332 5-863433 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 863745-864384 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 863745-864384 bp Feature: gene Location: 865345-866439 bp Ori: QHG15111.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 865579-866188 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 865579-866188 bp Feature: gene Location: 867432-868010 bp Feature: gene Location: 868177-868842 bp Ori: QHG15113.1 Feature: domain Description: TraX Location: 868192-868807 bp Feature: domain Description: TraX Location: 868192 -868807 bp Feature: gene Location: 3599157-3599336 bp Feature: gene Location: 3599320-3599802 bp Ori: QHG17084.1 Feature: domain Description: SRPBCC_4 Location: 3599329-3599764 bp Feature: domain Description: SRPBCC_4 Location: 359932 9-3599764 bp Feature: gene Location: 3600017-3601792 bp Ori: QHG19994.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3600182-3600782 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3600182 -3600782 bp Feature: gene Location: 3601900-3602286 bp Feature: gene Location: 3602427-3603107 bp Ori: QHG17086.1 Feature: domain Description: OmpR Location: 3602430-3603096 bp Feature: domain Description: OmpR Location: 3602 430-3603096 bp Feature: gene Location: 4509555-4511141 bp Ori: QHG17762.1 Feature: domain Description: pgi Location: 4509558-4511133 bp Feature: domain Description: pgi Location: 4509558-4511133 bp Feature: gene Location: 4511399-4512061 bp Ori: QHG17763.1 Feature: domain Description: Nif11 Location: 4511501-4511633 bp Feature: domain Description: Nif11 Location: 4511501-4511633 bp Feature: domain Description: Nif11 Location: 4511675-4511789 bp Feature: domain Description: Nif11 Location: 4511675-4511789 bp Feature: gene Location: 4512490-4513584 bp Ori: QHG17764.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4512670-4513273 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4512 670-45132 73 bp Feature: gene Location: 4513938-4515005 bp Ori: QHG17765.1 Feature: domain Description: AlbA_2 Location: 4513989-4514415 bp Feature: domain Description: AlbA_2 Location: 4513989-4514415 bp Feature: domain Description: TPR Location: 4514457-4514709 bp Feature: domain Description: TPR Location: 4514457-4514709 bp Feature: domain Description: TPR Location: 4514733-4514970 bp Feature: domain Description: TPR Location: 4514733-4514970 bp Feature: gene Location: 4515087-4515332 bp Feature: gene Location: 4974056-4975510 bp Ori: QHG18113.1 Feature: domain Description: cysS Location: 4974059-4975505 bp Feature: domain Description: cysS Location: 4974059-4975505 bp Feature: gene Location: 4975648-4976763 bp Ori: QHG18114.1 Feature: domain Description: YejR Location: 4975705-4976722 bp Feature: domain Description: YejR Location: 4975705-497672 2 bp Feature: gene Location: 4976869-4977051 bp Ori: QHG20079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4976917-4977040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4976917-4977040 bp Feature: gene Location: 4977143-4978795 bp Ori: QHG18115.1 Feature: domain Description: TM_helix Location: 4977275-4977413 bp Feature: domain Description: TM_helix Location: 49772 75-4977413 bp Feature: domain Description: TM_helix Location: 4977554-4977695 bp Feature: domain Description: TM_helix Location: 4977554-4977695 bp Feature: domain Description: TM_helix Location: 4977842-4977983 bp Feature: domain Description: TM_helix Location: 4977842 -4977983 bp Feature: domain Description: TM_helix Location: 4978130-4978271 bp Feature: domain Description: TM_helix Location: 4978130-49782 71 bp Feature: domain Description: TM_helix Location: 4978448-4978556 bp Feature: domain Description: TM_helix Location: 4978448-4978556 bp Feature: gene Location: 4978991-4979431 bp Ori: QHG18116.1 Feature: domain Description: Polyketide_cyc2 Location: 4979006-4979423 bp Feature: domain Description: Polyketide_cyc2 Location: 4979006-497942 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388), McrA (COG4058), CheA (COG0643), GAF (smart00065), MCP_signal (cl39097), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043)
KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), SPFH_eoslipins_u2 (cd13438), RVT-Retrons, TraX (pfam05857), SRPBCC_4 (cd07822), OmpR (COG0745), pgi (PRK14097), Nif11 (pfam07862), AlbA_2 (pfam04326)
TPR (smart00028), cysS (TIGR00435), YejR (COG0523), TM_helix (pfam05552), Polyketide_cyc2 (pfam10604)

Seq: CP046705.1 Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence (325114 bp)
Overview 1 RT 1: 21137-24603 bp Neighborhood of RT #1 [21137, 24603] WGR RVT-GII RVT-GII McrA group_II_RT_mat McrA Feature: gene Location: 21137-21376 bp Feature: gene Location: 21657-22217 bp Ori: QHG20486.1 Feature: domain Description: WGR Location: 21660-21897 bp Feature: domain Description: WGR Location: 21660-21897 bp Feature: gene Location: 22367-23656 bp Ori: QHG20487.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22475-22904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22475-22904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22907-23072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22907-23 072 bp Feature: domain Description: McrA Location: 23306-23627 bp Feature: domain Description: McrA Location: 23 3 06-23 627 bp Feature: gene Location: 23677-24264 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 23689-23914 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 23 689-23 914 bp Feature: domain Description: McrA Location: 23914-24235 bp Feature: domain Description: McrA Location: 23 914-2423 5 bp Feature: gene Location: 24364-24603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR (smart00773), RVT-GII, McrA (COG4058), group_II_RT_mat (TIGR04416)