myRT

myRT report for GCA_009883715.1_ASM988371v1

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Seq: CP032676.1 Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence (533287 bp)
Overview 1 RT 1: 390012-397430 bp 2 RT 2: 429478-446391 bp Neighborhood of RT #1 [390012, 397504] DEDD_Tnp_IS110 InsE RVT-GII GIIM RVT-GII GIIM PHA02517 Neighborhood of RT #2 [429478, 446480] RVT-GII COG3464 HTH_29 COG3464 RVT-GII GIIM COG3415 SsuD Esterase_713_like-2 RutF RVT_N RVT-GII GIIM MmgE_PrpD MFS_ShiA_like Feature: gene Location: 390012-391191 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 390021-390285 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 390021 -390285 bp Feature: gene Location: 391300-392273 bp Feature: domain Description: InsE Location: 391309-391657 bp Feature: domain Description: InsE Location: 391 309-391 657 bp Feature: gene Location: 392548-393978 bp Ori: QHG85469.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392869-393556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392869-393556 bp Feature: domain Description: GIIM Note: maturase Location: 393628-393856 bp Feature: domain Description: GIIM Note: maturase Location: 393628-393856 bp Feature: gene Location: 395012-396403 bp Ori: QHG85612.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395270-395957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 395270-395957 bp Feature: domain Description: GIIM Note: maturase Location: 396035-396260 bp Feature: domain Description: GIIM Note: maturase Location: 396035-396260 bp Feature: gene Location: 396547-396754 bp Feature: gene Location: 397013-397504 bp Ori: QHG85470.1 Feature: domain Description: PHA02517 Location: 397097-397430 bp Feature: domain Description: PHA0251 7 Location: 397097-397430 bp Feature: gene Location: 429478-430210 bp Feature: gene Location: 430203-430457 bp Feature: gene Location: 431139-432244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431430-431586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 430-431 586 bp Feature: gene Location: 432378-433898 bp Ori: QHG85496.1 Feature: domain Description: COG3464 Location: 432399-433071 bp Feature: domain Description: COG3464 Location: 432399-433071 bp Feature: domain Description: HTH_29 Location: 433185-433302 bp Feature: domain Description: HTH_29 Location: 4331 85-433302 bp Feature: domain Description: COG3464 Location: 433326-433884 bp Feature: domain Description: COG3464 Location: 433326-433884 bp Feature: gene Location: 434136-435611 bp Ori: QHG85497.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434478-435174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434478-4351 74 bp Feature: domain Description: GIIM Note: maturase Location: 435243-435471 bp Feature: domain Description: GIIM Note: maturase Location: 435243-435471 bp Feature: gene Location: 436248-436889 bp Feature: domain Description: COG3415 Location: 436347-436719 bp Feature: domain Description: COG341 5 Location: 436347-43671 9 bp Feature: gene Location: 437239-438315 bp Ori: QHG85498.1 Feature: domain Description: SsuD Location: 437347-438301 bp Feature: domain Description: SsuD Location: 437347-438301 bp Feature: gene Location: 438107-439336 bp Ori: QHG85499.1 Feature: domain Description: Esterase_713_like-2 Location: 438350-439310 bp Feature: domain Description: Esterase_71 3_like-2 Location: 438350-43931 0 bp Feature: gene Location: 439300-439827 bp Ori: QHG85500.1 Feature: domain Description: RutF Location: 439363-439804 bp Feature: domain Description: RutF Location: 439363-439804 bp Feature: gene Location: 440005-441656 bp Feature: domain Description: RVT_N Location: 440050-440287 bp Feature: domain Description: RVT_N Location: 440050-440287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440635-440941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440635-440941 bp Feature: domain Description: GIIM Note: maturase Location: 441064-441298 bp Feature: domain Description: GIIM Note: maturase Location: 441 064-441 298 bp Feature: gene Location: 443290-444669 bp Ori: QHG85501.1 Feature: domain Description: MmgE_PrpD Location: 443305-444571 bp Feature: domain Description: MmgE_PrpD Location: 443305-444571 bp Feature: gene Location: 445104-446480 bp Ori: QHG85614.1 Feature: domain Description: MFS_ShiA_like Location: 445167-446391 bp Feature: domain Description: MFS_ShiA_like Location: 4451 67-446391 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3464 (Transposase ), HTH_29 (pfam13551), COG3415 (Transposase ), SsuD (COG2141), Esterase_713_like-2 (cd12809)
RutF (TIGR03615), RVT_N (pfam13655), MmgE_PrpD (pfam03972), MFS_ShiA_like (cd17369)