myRT

myRT report for GCA_009884315.1_ASM988431v1

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Seq: CP041978.1 Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence (300719 bp)
Overview 1 RT 1: 20006-29712 bp 2 RT 2: 193268-202827 bp 3 RT 3: 247304-252536 bp 4 RT 4: 258635-265663 bp Neighborhood of RT #1 [20006, 29712] TraC-F-type RVT-GII HNHc TraC-F-type Neighborhood of RT #2 [193268, 202827] RVT-GII HNHc RVT_N RVT-GII GIIM HNH DEXDc Neighborhood of RT #3 [247304, 252536] beta_clamp RVT-GII COG4712 Neighborhood of RT #4 [258635, 265663] nuc_hydro RVT_N RVT-GII GIIM Feature: gene Location: 20006-20920 bp Feature: gene Location: 20923-21894 bp Ori: QHH87486.1 Feature: domain Description: TraC-F-type Location: 21343-21817 bp Feature: domain Description: TraC-F-type Location: 21 343-21 81 7 bp Feature: gene Location: 22610-24442 bp Ori: QHH87487.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22910-23615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291 0-2361 5 bp Feature: domain Description: HNHc Note: nucleases Location: 24194-24326 bp Feature: domain Description: HNHc Note: nucleases Location: 241 94-24326 bp Feature: gene Location: 24733-25701 bp Ori: QHH87488.1 Feature: domain Description: TraC-F-type Location: 24760-25540 bp Feature: domain Description: TraC-F-type Location: 24760-25540 bp Feature: gene Location: 25732-29712 bp Feature: gene Location: 193268-193966 bp Feature: gene Location: 193983-194738 bp Feature: gene Location: 194858-196744 bp Ori: QHH87605.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195170-195908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 951 70-1 95908 bp Feature: domain Description: HNHc Note: nucleases Location: 196487-196634 bp Feature: domain Description: HNHc Note: nucleases Location: 1 96487-1 96634 bp Feature: gene Location: 197608-199419 bp Ori: QHH87606.1 Gene: ltrA Feature: domain Description: RVT_N Location: 197662-197908 bp Feature: domain Description: RVT_N Location: 1 97662-1 97908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197962-198616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 97962-1 9861 6 bp Feature: domain Description: GIIM Note: maturase Location: 198679-198913 bp Feature: domain Description: GIIM Note: maturase Location: 1 98679-1 9891 3 bp Feature: domain Description: HNH Note: nucleases Location: 199153-199288 bp Feature: domain Description: HNH Note: nucleases Location: 1 991 53-1 99288 bp Feature: gene Location: 199991-202576 bp Ori: QHH87607.1 Feature: domain Description: DEXDc Location: 200768-201722 bp Feature: domain Description: DEXDc Location: 200768-201 722 bp Feature: gene Location: 202636-202827 bp Feature: gene Location: 247304-248416 bp Ori: QHH87647.1 Gene: dnaN Feature: domain Description: beta_clamp Location: 247307-248411 bp Feature: domain Description: beta_clamp Location: 247307-24841 1 bp Feature: gene Location: 248497-249024 bp Feature: gene Location: 249102-251000 bp Ori: QHH87649.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249417-250119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24941 7-2501 1 9 bp Feature: gene Location: 251762-252118 bp Ori: QHH87650.1 Feature: domain Description: COG4712 Location: 251771-252113 bp Feature: domain Description: COG471 2 Location: 251 771 -2521 1 3 bp Feature: gene Location: 252159-252536 bp Feature: gene Location: 258635-259585 bp Ori: QHH87660.1 Feature: domain Description: nuc_hydro Location: 258650-259556 bp Feature: domain Description: nuc_hydro Location: 258650-259556 bp Feature: gene Location: 260037-260216 bp Feature: gene Location: 260305-261951 bp Ori: QHH87662.1 Gene: ltrA Feature: domain Description: RVT_N Location: 260347-260584 bp Feature: domain Description: RVT_N Location: 260347-260584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260638-261298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260638-261 298 bp Feature: domain Description: GIIM Note: maturase Location: 261367-261598 bp Feature: domain Description: GIIM Note: maturase Location: 261 367-261 598 bp Feature: gene Location: 261967-262056 bp Feature: gene Location: 262164-265663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), HNH (pfam01844), DEXDc (smart00487), beta_clamp (cl29549), COG4712 (Uncharacterized protein ), nuc_hydro (cl00226)