myRT

myRT report for GCA_009884335.1_ASM988433v1

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Seq: CP041981.1 Bacillus paranthracis strain NCCP 15910 chromosome, complete genome (5208566 bp)
Overview 1 RT 1: 3171303-3174838 bp 2 RT 2: 3912153-3917257 bp Neighborhood of RT #1 [3171303, 3174840] DUF5412 RVT_N RVT-GII GIIM YdeE Neighborhood of RT #2 [3912153, 3917313] YugN amiF RVT-GII HNHc amiF caa3_CtaG Feature: gene Location: 3171303-3171689 bp Ori: QHH85420.1 Feature: domain Description: DUF5412 Location: 3171333-3171687 bp Feature: domain Description: DUF541 2 Location: 31 71 333-31 71 687 bp Feature: gene Location: 3172073-3172252 bp Feature: gene Location: 3172341-3173987 bp Ori: QHH85422.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3172383-3172620 bp Feature: domain Description: RVT_N Location: 31 72383-31 72620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3172674-3173334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 72674-31 73334 bp Feature: domain Description: GIIM Note: maturase Location: 3173403-3173634 bp Feature: domain Description: GIIM Note: maturase Location: 31 73403-31 73634 bp Feature: gene Location: 3174003-3174092 bp Feature: gene Location: 3174442-3174840 bp Ori: QHH85423.1 Feature: domain Description: YdeE Location: 3174469-3174838 bp Feature: domain Description: YdeE Location: 31 74469-31 74838 bp Feature: gene Location: 3912153-3912455 bp Ori: QHH86060.1 Feature: domain Description: YugN Location: 3912159-3912360 bp Feature: domain Description: YugN Location: 391 21 59-391 2360 bp Feature: gene Location: 3912502-3913125 bp Feature: domain Description: amiF Location: 3912505-3913120 bp Feature: domain Description: amiF Location: 391 2505-391 31 20 bp Feature: gene Location: 3913242-3915074 bp Ori: QHH86061.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3913542-3914247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 3542-391 4247 bp Feature: domain Description: HNHc Note: nucleases Location: 3914826-3914958 bp Feature: domain Description: HNHc Note: nucleases Location: 391 4826-391 4958 bp Feature: gene Location: 3915808-3916179 bp Gene: amiF Feature: domain Description: amiF Location: 3915811-3916180 bp Feature: domain Description: amiF Location: 391 581 1 -391 61 80 bp Feature: gene Location: 3916408-3917313 bp Ori: QHH86062.1 Gene: ctaG Feature: domain Description: caa3_CtaG Location: 3916417-3917257 bp Feature: domain Description: caa3_CtaG Location: 391 641 7-391 7257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5412 (pfam17428), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YdeE (COG3708), YugN (pfam08868), amiF (PRK13287), HNHc (smart00507), caa3_CtaG (TIGR02737)

Seq: CP041980.1 Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence (299329 bp)
Overview 1 RT 1: 4403-14109 bp 2 RT 2: 176217-185776 bp 3 RT 3: 230258-235489 bp 4 RT 4: 241588-247946 bp Neighborhood of RT #1 [4403, 14109] TraC-F-type RVT-GII HNHc TraC-F-type Neighborhood of RT #2 [176217, 185776] RVT-GII HNHc RVT_N RVT-GII GIIM HNH DEXDc Neighborhood of RT #3 [230258, 235489] beta_clamp RVT-GII COG4712 Neighborhood of RT #4 [241588, 248617] nuc_hydro RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Feature: gene Location: 4403-5317 bp Feature: gene Location: 5320-6291 bp Ori: QHH82467.1 Feature: domain Description: TraC-F-type Location: 5740-6214 bp Feature: domain Description: TraC-F-type Location: 5740-62 14 bp Feature: gene Location: 7007-8839 bp Ori: QHH82468.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7307-8012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7307-8012 bp Feature: domain Description: HNHc Note: nucleases Location: 8591-8723 bp Feature: domain Description: HNHc Note: nucleases Location: 8591-872 3 bp Feature: gene Location: 9130-10098 bp Ori: QHH82469.1 Feature: domain Description: TraC-F-type Location: 9157-9937 bp Feature: domain Description: TraC-F-type Location: 9157-9937 bp Feature: gene Location: 10129-14109 bp Feature: gene Location: 176217-176915 bp Feature: gene Location: 176932-177687 bp Feature: gene Location: 177807-179693 bp Ori: QHH82584.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178119-178857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178119-178857 bp Feature: domain Description: HNHc Note: nucleases Location: 179436-179583 bp Feature: domain Description: HNHc Note: nucleases Location: 179436-179583 bp Feature: gene Location: 180557-182368 bp Ori: QHH82585.1 Gene: ltrA Feature: domain Description: RVT_N Location: 180611-180857 bp Feature: domain Description: RVT_N Location: 180611-180857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180911-181565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 180911-181565 bp Feature: domain Description: GIIM Note: maturase Location: 181628-181862 bp Feature: domain Description: GIIM Note: maturase Location: 18162 8-181862 bp Feature: domain Description: HNH Note: nucleases Location: 182102-182237 bp Feature: domain Description: HNH Note: nucleases Location: 182 102 -182 2 37 bp Feature: gene Location: 182940-185525 bp Ori: QHH82586.1 Feature: domain Description: DEXDc Location: 183717-184671 bp Feature: domain Description: DEXDc Location: 183717-184671 bp Feature: gene Location: 185585-185776 bp Feature: gene Location: 230258-231370 bp Ori: QHH82694.1 Gene: dnaN Feature: domain Description: beta_clamp Location: 230261-231365 bp Feature: domain Description: beta_clamp Location: 2 302 61-2 31365 bp Feature: gene Location: 231450-231977 bp Feature: gene Location: 232055-233953 bp Ori: QHH82626.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232370-233072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 370-2 33072 bp Feature: gene Location: 234715-235071 bp Ori: QHH82627.1 Feature: domain Description: COG4712 Location: 234724-235066 bp Feature: domain Description: COG4712 Location: 2 3472 4-2 35066 bp Feature: gene Location: 235112-235489 bp Feature: gene Location: 241588-242538 bp Ori: QHH82637.1 Feature: domain Description: nuc_hydro Location: 241603-242509 bp Feature: domain Description: nuc_hydro Location: 2 41603-2 42 509 bp Feature: gene Location: 242990-243169 bp Feature: gene Location: 243258-244904 bp Ori: QHH82639.1 Gene: ltrA Feature: domain Description: RVT_N Location: 243300-243537 bp Feature: domain Description: RVT_N Location: 2 43300-2 43537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243591-244251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 43591-2 442 51 bp Feature: domain Description: GIIM Note: maturase Location: 244320-244551 bp Feature: domain Description: GIIM Note: maturase Location: 2 4432 0-2 44551 bp Feature: gene Location: 244920-245009 bp Feature: gene Location: 245117-248617 bp Ori: QHH82640.1 Feature: domain Description: TraG-D_C Location: 246734-247094 bp Feature: domain Description: TraG-D_C Location: 2 46734-2 47094 bp Feature: domain Description: Ftsk_gamma Location: 247502-247679 bp Feature: domain Description: Ftsk_gamma Location: 2 47502 -2 47679 bp Feature: domain Description: Ftsk_gamma Location: 247811-247946 bp Feature: domain Description: Ftsk_gamma Location: 2 47811-2 47946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), HNH (pfam01844), DEXDc (smart00487), beta_clamp (cl29549), COG4712 (Uncharacterized protein ), nuc_hydro (cl00226)
TraG-D_C (pfam12696), Ftsk_gamma (smart00843)