myRT

myRT report for GCA_009906875.1_ASM990687v1

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Seq: CP047649.1 Klebsiella pneumoniae strain 158590 chromosome, complete genome (5439711 bp)
Overview 1 RT 1: 1213372-1219105 bp 2 RT 2: 1377642-1381276 bp 3 RT 3: 1807887-1814358 bp 4 RT 4: 3131867-3137016 bp 5 RT 5: 3280655-3284508 bp 6 RT 6: 3353054-3357749 bp 7 RT 7: 3683148-3686053 bp Neighborhood of RT #1 [1213372, 1219110] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1377642, 1383576] RVT-GII PHA02515 Neighborhood of RT #3 [1807887, 1814372] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [3131867, 3137024] umuC PRK10276 RVT-GII PinE Neighborhood of RT #5 [3280655, 3284508] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3353054, 3357787] LexA_DNA_bind PRK10597 RVT-GII PRK05318 Neighborhood of RT #7 [3683148, 3686103] RVT-GII int Feature: gene Location: 1213372-1214223 bp Feature: domain Description: dam Location: 1213375-1214146 bp Feature: domain Description: dam Location: 1 21 3375-1 21 41 46 bp Feature: gene Location: 1214220-1216604 bp Feature: domain Description: Phage_GPA Location: 1214784-1215750 bp Feature: domain Description: Phage_GPA Location: 1 21 4784-1 21 5750 bp Feature: gene Location: 1217082-1218569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1217487-1218177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 7487-1 21 81 77 bp Feature: gene Location: 1218677-1218865 bp Feature: gene Location: 1218877-1219110 bp Feature: domain Description: DinI Location: 1218922-1219105 bp Feature: domain Description: DinI Location: 1 21 8922-1 21 91 05 bp Feature: gene Location: 1377642-1378262 bp Feature: gene Location: 1378458-1378796 bp Feature: gene Location: 1378893-1380377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379295-1379985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 379295-1 379985 bp Feature: gene Location: 1380386-1380553 bp Feature: gene Location: 1380919-1383576 bp Feature: domain Description: PHA02515 Location: 1380931-1381276 bp Feature: domain Description: PHA0251 5 Location: 1 380931 -1 381 276 bp Feature: gene Location: 1807887-1809311 bp Feature: domain Description: SbcB Location: 1807893-1809309 bp Feature: domain Description: SbcB Location: 1 807893-1 809309 bp Feature: gene Location: 1809486-1810655 bp Feature: domain Description: dacD Location: 1809495-1810650 bp Feature: domain Description: dacD Location: 1 809495-1 81 0650 bp Feature: gene Location: 1811173-1812660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811578-1812268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 1 578-1 81 2268 bp Feature: gene Location: 1812742-1813215 bp Feature: domain Description: PRK10016 Location: 1812745-1813204 bp Feature: domain Description: PRK1 001 6 Location: 1 81 2745-1 81 3204 bp Feature: gene Location: 1813299-1814372 bp Feature: domain Description: YccC Location: 1813320-1814358 bp Feature: domain Description: YccC Location: 1 81 3320-1 81 4358 bp Feature: gene Location: 3131867-3133132 bp Feature: domain Description: umuC Location: 3131870-3133130 bp Feature: domain Description: umuC Location: 31 31 870-31 331 30 bp Feature: gene Location: 3133134-3133553 bp Feature: domain Description: PRK10276 Location: 3133137-3133548 bp Feature: domain Description: PRK1 0276 Location: 31 331 37-31 33548 bp Feature: gene Location: 3133633-3135117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3134035-3134725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 34035-31 34725 bp Feature: gene Location: 3135126-3135293 bp Feature: gene Location: 3136515-3137024 bp Feature: domain Description: PinE Location: 3136563-3137016 bp Feature: domain Description: PinE Location: 31 36563-31 3701 6 bp Feature: gene Location: 3280655-3281920 bp Feature: domain Description: umuC Location: 3280658-3281918 bp Feature: domain Description: umuC Location: 3280658-3281 91 8 bp Feature: gene Location: 3281923-3282342 bp Feature: domain Description: PRK10276 Location: 3281926-3282337 bp Feature: domain Description: PRK1 0276 Location: 3281 926-3282337 bp Feature: gene Location: 3282421-3283905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3282823-3283513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3282823-328351 3 bp Feature: gene Location: 3283914-3284081 bp Feature: gene Location: 3284362-3284508 bp Feature: gene Location: 3353054-3353446 bp Feature: domain Description: LexA_DNA_bind Location: 3353132-3353321 bp Feature: domain Description: LexA_DNA_bind Location: 33531 32-3353321 bp Feature: gene Location: 3353789-3354022 bp Feature: domain Description: PRK10597 Location: 3353792-3354017 bp Feature: domain Description: PRK1 0597 Location: 3353792-335401 7 bp Feature: gene Location: 3354101-3355585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3354503-3355193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3354503-33551 93 bp Feature: gene Location: 3355594-3355761 bp Feature: gene Location: 3356426-3357787 bp Feature: domain Description: PRK05318 Location: 3356450-3357749 bp Feature: domain Description: PRK0531 8 Location: 3356450-3357749 bp Feature: gene Location: 3683148-3684632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3683550-3684240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3683550-3684240 bp Feature: gene Location: 3684641-3684808 bp Feature: gene Location: 3685051-3686103 bp Feature: domain Description: int Location: 3685054-3686053 bp Feature: domain Description: int Location: 3685054-3686053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), PHA02515 (hypothetical protein; Provisional), SbcB (COG2925), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PinE (COG1961), LexA_DNA_bind (pfam01726), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), int (PHA02601)