myRT

myRT report for GCA_009911795.1_ASM991179v1

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Seq: CP047898.1 Pseudarthrobacter sp. YJ56 chromosome contig_1, complete sequence (4962517 bp)
Overview 1 RT 1: 43180-47408 bp 2 RT 2: 2317254-2323270 bp 3 RT 3: 4545820-4554098 bp Neighborhood of RT #1 [43180, 47407] IS285 Tra8 RVT-GII GIIM Tra8 MFS_PcaK_like Neighborhood of RT #2 [2317254, 2323473] PRK11856 Tra8 RVT-GII GIIM Tra8 GT4_WavL-like GT4_WavL-like Neighborhood of RT #3 [4545820, 4554121] AnsP RVT-Retrons PLDc_N_DEXD_b1 SSL2 DUF3427 Feature: gene Location: 43180-43920 bp Feature: domain Description: IS285 Location: 43186-43903 bp Feature: domain Description: IS285 Location: 431 86-43903 bp Feature: gene Location: 43945-44394 bp Feature: domain Description: Tra8 Location: 43957-44371 bp Feature: domain Description: Tra8 Location: 43957-44371 bp Feature: gene Location: 44507-45886 bp Ori: QHK22105.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44771-45455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44771 -45455 bp Feature: domain Description: GIIM Note: maturase Location: 45533-45752 bp Feature: domain Description: GIIM Note: maturase Location: 45533-45752 bp Feature: gene Location: 46485-46982 bp Feature: domain Description: Tra8 Location: 46488-46920 bp Feature: domain Description: Tra8 Location: 46488-46920 bp Feature: gene Location: 46979-47407 bp Feature: domain Description: MFS_PcaK_like Location: 47039-47408 bp Feature: domain Description: MFS_PcaK_like Location: 47039-47408 bp Feature: gene Location: 2317254-2317943 bp Feature: domain Description: PRK11856 Location: 2317260-2317935 bp Feature: domain Description: PRK1 1 856 Location: 231 7260-231 7935 bp Feature: gene Location: 2318833-2319270 bp Feature: domain Description: Tra8 Location: 2318854-2319256 bp Feature: domain Description: Tra8 Location: 231 8854-231 9256 bp Feature: gene Location: 2319383-2320762 bp Ori: QHK22278.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2319647-2320331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 9647-2320331 bp Feature: domain Description: GIIM Note: maturase Location: 2320409-2320628 bp Feature: domain Description: GIIM Note: maturase Location: 2320409-2320628 bp Feature: gene Location: 2321361-2321945 bp Ori: QHK20162.1 Feature: domain Description: Tra8 Location: 2321367-2321883 bp Feature: domain Description: Tra8 Location: 2321 367-2321 883 bp Feature: gene Location: 2322361-2323473 bp Ori: QHK20163.1 Feature: domain Description: GT4_WavL-like Location: 2322397-2322574 bp Feature: domain Description: GT4_WavL-like Location: 2322397-2322574 bp Feature: domain Description: GT4_WavL-like Location: 2322973-2323270 bp Feature: domain Description: GT4_WavL-like Location: 2322973-2323270 bp Feature: gene Location: 4545820-4547232 bp Ori: QHK21802.1 Feature: domain Description: AnsP Location: 4545847-4547164 bp Feature: domain Description: AnsP Location: 4545847-45471 64 bp Feature: gene Location: 4547455-4547747 bp Feature: gene Location: 4547976-4548980 bp Ori: QHK21803.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4548105-4548723 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45481 05-4548723 bp Feature: gene Location: 4549304-4550773 bp Feature: gene Location: 4550966-4554121 bp Ori: QHK21805.1 Feature: domain Description: PLDc_N_DEXD_b1 Location: 4551356-4551782 bp Feature: domain Description: PLDc_N_DEXD_b1 Location: 4551 356-4551 782 bp Feature: domain Description: SSL2 Location: 4551887-4552973 bp Feature: domain Description: SSL2 Location: 4551 887-4552973 bp Feature: domain Description: DUF3427 Location: 4553567-4554098 bp Feature: domain Description: DUF3427 Location: 4553567-4554098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), MFS_PcaK_like (cd17365), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), GT4_WavL-like (cd03819), AnsP (COG1113), RVT-Retrons, PLDc_N_DEXD_b1 (cd09203)
SSL2 (COG1061), DUF3427 (pfam11907)