myRT

myRT report for GCA_009914235.1_ASM991423v1

Download annotations/find similar RTs

Seq: CP040122.1 Klebsiella pneumoniae strain LSH-KPN148 chromosome, complete genome (5444919 bp)
Overview 1 RT 1: 1223948-1229681 bp 2 RT 2: 1389418-1392815 bp 3 RT 3: 1843479-1845067 bp 4 RT 4: 1913323-1919201 bp 5 RT 5: 3277517-3281370 bp 6 RT 6: 3350963-3358369 bp 7 RT 7: 3680411-3683316 bp Neighborhood of RT #1 [1223948, 1229686] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1389418, 1392815] RVT-GII RVT-GII Neighborhood of RT #3 [1843479, 1845067] RVT-GII Neighborhood of RT #4 [1913323, 1919203] Rve PinE RVT-GII RVT-GII PRK10276 umuC Neighborhood of RT #5 [3277517, 3281370] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3350963, 3358554] group_II_RT_mat RVT-GII PRK05318 RVT-GII HTH_28 rve Neighborhood of RT #7 [3680411, 3683366] RVT-GII int Feature: gene Location: 1223948-1224799 bp Feature: domain Description: dam Location: 1223951-1224722 bp Feature: domain Description: dam Location: 1 223951 -1 224722 bp Feature: gene Location: 1224796-1227180 bp Feature: domain Description: Phage_GPA Location: 1225360-1226326 bp Feature: domain Description: Phage_GPA Location: 1 225360-1 226326 bp Feature: gene Location: 1227658-1229145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1228063-1228753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 228063-1 228753 bp Feature: gene Location: 1229253-1229441 bp Feature: gene Location: 1229453-1229686 bp Feature: domain Description: DinI Location: 1229498-1229681 bp Feature: domain Description: DinI Location: 1 229498-1 229681 bp Feature: gene Location: 1389418-1390038 bp Feature: gene Location: 1390234-1390572 bp Feature: gene Location: 1390669-1391274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1390672-1390882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 390672-1 390882 bp Feature: gene Location: 1391255-1392154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1391657-1392038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 391 657-1 392038 bp Feature: gene Location: 1392163-1392330 bp Feature: gene Location: 1392558-1392815 bp Feature: gene Location: 1843479-1843691 bp Feature: gene Location: 1843853-1844026 bp Feature: gene Location: 1844104-1844292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1844137-1844263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8441 37-1 844263 bp Feature: gene Location: 1844603-1844797 bp Feature: gene Location: 1844858-1845067 bp Feature: gene Location: 1913323-1914039 bp Feature: domain Description: Rve Location: 1913338-1913983 bp Feature: domain Description: Rve Location: 1 91 3338-1 91 3983 bp Feature: gene Location: 1914045-1914554 bp Feature: domain Description: PinE Location: 1914093-1914546 bp Feature: domain Description: PinE Location: 1 91 4093-1 91 4546 bp Feature: gene Location: 1915949-1916545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1916354-1916462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 6354-1 91 6462 bp Feature: gene Location: 1916448-1917437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1916457-1917045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 6457-1 91 7045 bp Feature: gene Location: 1917517-1917936 bp Feature: domain Description: PRK10276 Location: 1917520-1917931 bp Feature: domain Description: PRK1 0276 Location: 1 91 7520-1 91 7931 bp Feature: gene Location: 1917938-1919203 bp Feature: domain Description: umuC Location: 1917941-1919201 bp Feature: domain Description: umuC Location: 1 91 7941 -1 91 9201 bp Feature: gene Location: 3277517-3278782 bp Feature: domain Description: umuC Location: 3277520-3278780 bp Feature: domain Description: umuC Location: 3277520-3278780 bp Feature: gene Location: 3278785-3279204 bp Feature: domain Description: PRK10276 Location: 3278788-3279199 bp Feature: domain Description: PRK1 0276 Location: 3278788-32791 99 bp Feature: gene Location: 3279283-3280767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3279685-3280375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3279685-3280375 bp Feature: gene Location: 3280776-3280943 bp Feature: gene Location: 3281224-3281370 bp Feature: gene Location: 3350963-3351292 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3350969-3351158 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3350969-3351 1 58 bp Feature: gene Location: 3351321-3351545 bp Feature: gene Location: 3351551-3352450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3351953-3352358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3351 953-3352358 bp Feature: gene Location: 3352459-3352626 bp Feature: gene Location: 3353291-3354652 bp Feature: domain Description: PRK05318 Location: 3353315-3354614 bp Feature: domain Description: PRK0531 8 Location: 335331 5-335461 4 bp Feature: gene Location: 3355577-3357061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3355979-3356669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3355979-3356669 bp Feature: gene Location: 3357070-3357237 bp Feature: gene Location: 3357508-3358554 bp Feature: domain Description: HTH_28 Location: 3357631-3357751 bp Feature: domain Description: HTH_28 Location: 3357631 -3357751 bp Feature: domain Description: rve Location: 3358039-3358369 bp Feature: domain Description: rve Location: 3358039-3358369 bp Feature: gene Location: 3680411-3681895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3680813-3681503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 368081 3-3681 503 bp Feature: gene Location: 3681904-3682071 bp Feature: gene Location: 3682314-3683366 bp Feature: domain Description: int Location: 3682317-3683316 bp Feature: domain Description: int Location: 368231 7-368331 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), Rve (COG3316), PinE (COG1961), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), group_II_RT_mat (TIGR04416), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional)
HTH_28 (pfam13518), rve (pfam00665), int (PHA02601)

Seq: CP040123.1 Klebsiella pneumoniae strain LSH-KPN148 plasmid pLSH-KPN148-1, complete sequence (227415 bp)
Overview 1 RT 1: 62673-65789 bp 2 RT 2: 154686-158875 bp Neighborhood of RT #1 [62673, 65789] PRK10276 RVT-GII Neighborhood of RT #2 [154686, 158875] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII Feature: gene Location: 62673-63098 bp Feature: domain Description: PRK10276 Location: 62676-63084 bp Feature: domain Description: PRK102 76 Location: 62 676-63084 bp Feature: gene Location: 63292-63504 bp Feature: gene Location: 63579-64988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63906-64596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63906-64596 bp Feature: gene Location: 65222-65452 bp Feature: gene Location: 65511-65789 bp Feature: gene Location: 154686-155357 bp Feature: domain Description: Plasmid_stab_B Location: 154701-154908 bp Feature: domain Description: Plasmid_stab_B Location: 154701-154908 bp Feature: domain Description: Plasmid_stab_B Location: 155013-155220 bp Feature: domain Description: Plasmid_stab_B Location: 155013-1552 2 0 bp Feature: gene Location: 155360-156331 bp Feature: domain Description: StbA Location: 155363-156308 bp Feature: domain Description: StbA Location: 155363-156308 bp Feature: gene Location: 156580-158067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156985-157675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156985-157675 bp Feature: gene Location: 158073-158240 bp Feature: gene Location: 158480-158875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Plasmid_stab_B (pfam10784), StbA (pfam06406)

Seq: CP040124.1 Klebsiella pneumoniae strain LSH-KPN148 plasmid pLSH-KPN148-2, complete sequence (72060 bp)
Overview 1 RT 1: 60107-63160 bp Neighborhood of RT #1 [60107, 63160] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 60107-60529 bp Feature: domain Description: DUF1380 Location: 60110-60404 bp Feature: domain Description: DUF13 80 Location: 60110-60404 bp Feature: gene Location: 60526-60717 bp Feature: gene Location: 61031-62698 bp Feature: domain Description: RVT_N Location: 61079-61316 bp Feature: domain Description: RVT_N Location: 61079-613 16 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61367-62009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 613 67-62009 bp Feature: domain Description: GIIM Note: maturase Location: 62060-62294 bp Feature: domain Description: GIIM Note: maturase Location: 62060-62294 bp Feature: domain Description: HNHc Note: nucleases Location: 62504-62663 bp Feature: domain Description: HNHc Note: nucleases Location: 62504-62663 bp Feature: gene Location: 62735-62881 bp Feature: gene Location: 62978-63160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)