myRT

myRT report for GCA_009914255.1_ASM991425v1

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Seq: CP040391.1 Klebsiella pneumoniae strain LSH-KPN25 chromosome, complete genome (5441138 bp)
Overview 1 RT 1: 1316008-1319083 bp 2 RT 2: 1624043-1629236 bp 3 RT 3: 3060270-3063921 bp 4 RT 4: 3313711-3317564 bp 5 RT 5: 3650345-3653783 bp Neighborhood of RT #1 [1316008, 1319088] PRK09678 RVT-Retrons SmpB PRK10724 Neighborhood of RT #2 [1624043, 1629286] IclR PRK15440 RVT-GII PRK15440 MFS_ExuT_GudP_like Neighborhood of RT #3 [3060270, 3063977] PRK10597 RVT-GII Laminin_G_3 Neighborhood of RT #4 [3313711, 3317564] umuC PRK10276 RVT-GII Neighborhood of RT #5 [3650345, 3653833] DinI RVT-GII int Feature: gene Location: 1316008-1316226 bp Feature: domain Description: PRK09678 Location: 1316011-1316209 bp Feature: domain Description: PRK09678 Location: 1 31 601 1 -1 31 6209 bp Feature: gene Location: 1316473-1316661 bp Feature: gene Location: 1317104-1317403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1317107-1317230 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 31 71 07-1 31 7230 bp Feature: gene Location: 1318019-1318501 bp Feature: domain Description: SmpB Location: 1318049-1318493 bp Feature: domain Description: SmpB Location: 1 31 8049-1 31 8493 bp Feature: gene Location: 1318651-1319088 bp Feature: domain Description: PRK10724 Location: 1318654-1319083 bp Feature: domain Description: PRK1 0724 Location: 1 31 8654-1 31 9083 bp Feature: gene Location: 1624043-1624828 bp Feature: domain Description: IclR Location: 1624070-1624796 bp Feature: domain Description: IclR Location: 1 624070-1 624796 bp Feature: gene Location: 1624839-1625024 bp Feature: domain Description: PRK15440 Location: 1624842-1624989 bp Feature: domain Description: PRK1 5440 Location: 1 624842-1 624989 bp Feature: gene Location: 1625354-1626841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1625759-1626449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 625759-1 626449 bp Feature: gene Location: 1626932-1627954 bp Feature: domain Description: PRK15440 Location: 1626938-1627952 bp Feature: domain Description: PRK1 5440 Location: 1 626938-1 627952 bp Feature: gene Location: 1627994-1629286 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1628039-1629236 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1 628039-1 629236 bp Feature: gene Location: 3060270-3060518 bp Feature: domain Description: PRK10597 Location: 3060273-3060513 bp Feature: domain Description: PRK1 0597 Location: 3060273-306051 3 bp Feature: gene Location: 3060834-3061043 bp Feature: gene Location: 3061103-3062587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3061505-3062195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3061 505-30621 95 bp Feature: gene Location: 3062596-3062763 bp Feature: gene Location: 3063246-3063977 bp Feature: domain Description: Laminin_G_3 Location: 3063582-3063921 bp Feature: domain Description: Laminin_G_3 Location: 3063582-3063921 bp Feature: gene Location: 3313711-3314976 bp Feature: domain Description: umuC Location: 3313714-3314974 bp Feature: domain Description: umuC Location: 331 371 4-331 4974 bp Feature: gene Location: 3314979-3315398 bp Feature: domain Description: PRK10276 Location: 3314982-3315393 bp Feature: domain Description: PRK1 0276 Location: 331 4982-331 5393 bp Feature: gene Location: 3315477-3316961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3315879-3316569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 5879-331 6569 bp Feature: gene Location: 3316970-3317137 bp Feature: gene Location: 3317418-3317564 bp Feature: gene Location: 3650345-3650578 bp Feature: domain Description: DinI Location: 3650387-3650573 bp Feature: domain Description: DinI Location: 3650387-3650573 bp Feature: gene Location: 3650589-3650777 bp Feature: gene Location: 3650878-3652362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651280-3651970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651 280-3651 970 bp Feature: gene Location: 3652371-3652538 bp Feature: gene Location: 3652781-3653833 bp Feature: domain Description: int Location: 3652784-3653783 bp Feature: domain Description: int Location: 3652784-3653783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin), IclR (pfam01614), PRK15440 (L-rhamnonate dehydratase; Provisional), RVT-GII, MFS_ExuT_GudP_like (cd17319), PRK10597 (DNA damage-inducible protein I; Provisional), Laminin_G_3 (pfam13385)
umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), int (PHA02601)