myRT

myRT report for GCA_009930815.1_ASM993081v1

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Seq: CP022222.1 Bradyrhizobium sp. CCBAU 051011 chromosome, complete genome (9099371 bp)
Overview 1 RT 1: 2649887-2655998 bp 2 RT 2: 3238905-3242925 bp 3 RT 3: 8032589-8037916 bp 4 RT 4: 8070371-8074659 bp 5 RT 5: 8276255-8280043 bp 6 RT 6: 8303214-8308349 bp 7 RT 7: 8476181-8481972 bp Neighborhood of RT #1 [2649887, 2656006] DUF2235 DUF4263 RVT-Retrons DUF1902 Neighborhood of RT #2 [3238905, 3243972] HTH_Tnp_1 RVT-GII DUF772 InsE Neighborhood of RT #3 [8032589, 8039595] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Phage_int_SAM_1 Neighborhood of RT #4 [8070371, 8074659] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII DDE_Tnp_IS66 Neighborhood of RT #5 [8276255, 8280043] TnpB_IS66 COG3436 Peptidases_S8_10 RVT-GII GIIM Neighborhood of RT #6 [8303214, 8308349] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #7 [8476181, 8482049] PRK05506 DUF4096 RVT-GII GIIM RVT-GII GIIM LZ_Tnp_IS66 Feature: gene Location: 2649887-2651173 bp Ori: QHO73399.1 Feature: domain Description: DUF2235 Location: 2649893-2650784 bp Feature: domain Description: DUF2235 Location: 2649893-2650784 bp Feature: gene Location: 2651279-2652364 bp Ori: QHO73400.1 Feature: domain Description: DUF4263 Location: 2651795-2652305 bp Feature: domain Description: DUF4263 Location: 2651 795-2652305 bp Feature: gene Location: 2652477-2654211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2652612-2653050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 265261 2-2653050 bp Feature: gene Location: 2654824-2655525 bp Feature: gene Location: 2655770-2656006 bp Ori: QHO73402.1 Feature: domain Description: DUF1902 Location: 2655788-2655998 bp Feature: domain Description: DUF1 902 Location: 2655788-2655998 bp Feature: gene Location: 3238905-3239366 bp Ori: QHO78843.1 Feature: domain Description: HTH_Tnp_1 Location: 3238980-3239163 bp Feature: domain Description: HTH_Tnp_1 Location: 3238980-32391 63 bp Feature: gene Location: 3239447-3239875 bp Feature: gene Location: 3240440-3241688 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3240644-3241229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3240644-3241 229 bp Feature: gene Location: 3241764-3242210 bp Feature: domain Description: DUF772 Location: 3241926-3242142 bp Feature: domain Description: DUF772 Location: 3241 926-32421 42 bp Feature: gene Location: 3242625-3243972 bp Feature: domain Description: InsE Location: 3242688-3242925 bp Feature: domain Description: InsE Location: 3242688-3242925 bp Feature: gene Location: 8032589-8032933 bp Ori: QHO77696.1 Feature: domain Description: TnpB_IS66 Location: 8032610-8032898 bp Feature: domain Description: TnpB_IS66 Location: 803261 0-8032898 bp Feature: gene Location: 8033008-8034057 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8033164-8033389 bp Feature: domain Description: LZ_Tnp_IS66 Location: 80331 64-8033389 bp Feature: domain Description: zf-IS66 Location: 8033437-8033524 bp Feature: domain Description: zf-IS66 Location: 8033437-8033524 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8033584-8034058 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8033584-8034058 bp Feature: gene Location: 8034146-8035387 bp Ori: QHO77697.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8034347-8035031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8034347-8035031 bp Feature: gene Location: 8035875-8036612 bp Ori: QHO77698.1 Feature: domain Description: DDE_Tnp_IS66 Location: 8036073-8036463 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8036073-8036463 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8036484-8036598 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8036484-8036598 bp Feature: gene Location: 8036974-8039595 bp Ori: QHO77699.1 Feature: domain Description: Phage_int_SAM_1 Location: 8037793-8037916 bp Feature: domain Description: Phage_int_SAM_1 Location: 8037793-803791 6 bp Feature: gene Location: 8070371-8070574 bp Feature: gene Location: 8070838-8071398 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8070841-8071231 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8070841 -8071 231 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8071252-8071363 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8071 252-8071 363 bp Feature: gene Location: 8072081-8073308 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8072282-8072966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8072282-8072966 bp Feature: gene Location: 8073316-8073684 bp Ori: QHO77715.1 Feature: domain Description: DDE_Tnp_IS66 Location: 8073409-8073604 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8073409-8073604 bp Feature: gene Location: 8073656-8074659 bp Feature: gene Location: 8276255-8276449 bp Ori: QHO77857.1 Feature: domain Description: TnpB_IS66 Location: 8276279-8276420 bp Feature: domain Description: TnpB_IS66 Location: 8276279-8276420 bp Feature: gene Location: 8276495-8277105 bp Feature: domain Description: COG3436 Location: 8276813-8277071 bp Feature: domain Description: COG3436 Location: 827681 3-8277071 bp Feature: gene Location: 8277318-8278325 bp Ori: QHO79400.1 Feature: domain Description: Peptidases_S8_10 Location: 8277345-8277474 bp Feature: domain Description: Peptidases_S8_1 0 Location: 8277345-8277474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8277528-8278023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8277528-8278023 bp Feature: domain Description: GIIM Note: maturase Location: 8278098-8278308 bp Feature: domain Description: GIIM Note: maturase Location: 8278098-8278308 bp Feature: gene Location: 8279231-8279533 bp Feature: gene Location: 8279765-8280043 bp Feature: gene Location: 8303214-8303558 bp Ori: QHO77869.1 Feature: domain Description: TnpB_IS66 Location: 8303235-8303523 bp Feature: domain Description: TnpB_IS66 Location: 8303235-8303523 bp Feature: gene Location: 8303633-8304682 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8303789-8304014 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8303789-830401 4 bp Feature: domain Description: zf-IS66 Location: 8304062-8304149 bp Feature: domain Description: zf-IS66 Location: 8304062-83041 49 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8304209-8304683 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8304209-8304683 bp Feature: gene Location: 8304771-8306012 bp Ori: QHO77870.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8304972-8305656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8304972-8305656 bp Feature: gene Location: 8306500-8307237 bp Ori: QHO77871.1 Feature: domain Description: DDE_Tnp_IS66 Location: 8306698-8307088 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8306698-8307088 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8307109-8307223 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 83071 09-8307223 bp Feature: gene Location: 8308095-8308349 bp Feature: gene Location: 8476181-8478066 bp Feature: domain Description: PRK05506 Location: 8476214-8477522 bp Feature: domain Description: PRK05506 Location: 847621 4-8477522 bp Feature: gene Location: 8478131-8478343 bp Feature: domain Description: DUF4096 Location: 8478155-8478341 bp Feature: domain Description: DUF4096 Location: 84781 55-8478341 bp Feature: gene Location: 8478549-8479577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8478765-8479074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8478765-8479074 bp Feature: domain Description: GIIM Note: maturase Location: 8479269-8479476 bp Feature: domain Description: GIIM Note: maturase Location: 8479269-8479476 bp Feature: gene Location: 8479684-8480028 bp Feature: gene Location: 8480153-8480617 bp Ori: QHO77997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8480162-8480240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84801 62-8480240 bp Feature: domain Description: GIIM Note: maturase Location: 8480309-8480525 bp Feature: domain Description: GIIM Note: maturase Location: 8480309-8480525 bp Feature: gene Location: 8481131-8481287 bp Feature: gene Location: 8481624-8482049 bp Ori: QHO77998.1 Feature: domain Description: LZ_Tnp_IS66 Location: 8481735-8481972 bp Feature: domain Description: LZ_Tnp_IS66 Location: 8481 735-8481 972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2235 (pfam09994), DUF4263 (pfam14082), RVT-Retrons, DUF1902 (pfam08972), HTH_Tnp_1 (pfam01527), RVT-GII, DUF772 (pfam05598), InsE (COG2963), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007)
zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Phage_int_SAM_1 (pfam02899), COG3436 (Transposase ), Peptidases_S8_10 (cd07494), GIIM (pfam08388), PRK05506 (bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional), DUF4096 (pfam13340)