myRT

myRT report for GCA_009930895.1_ASM993089v1

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Seq: CP026082.1 Streptococcus agalactiae strain YZ1605 chromosome, complete genome (2281602 bp)
Overview 1 RT 1: 104178-108695 bp 2 RT 2: 377395-381533 bp 3 RT 3: 553273-557057 bp 4 RT 4: 592105-599473 bp 5 RT 5: 654345-665117 bp 6 RT 6: 773709-779749 bp 7 RT 7: 969998-977773 bp 8 RT 8: 1162916-1169175 bp 9 RT 9: 1356240-1365737 bp 10 RT 10: 1373212-1380919 bp 11 RT 11: 1570063-1576859 bp 12 RT 12: 1652037-1656634 bp 13 RT 13: 1940062-1946644 bp Neighborhood of RT #1 [104178, 108718] NTP_transf_6 DUF2992 RVT-GII GIIM PhoE Neighborhood of RT #2 [377395, 381553] DeoR CelC RVT_N RVT-GII GIIM CelC CelA Neighborhood of RT #3 [553273, 557062] YkuJ RVT-GII GIIM HisM GlnQ Neighborhood of RT #4 [592105, 599487] TTHA1623-like_MBL-fold PRK08643 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #5 [654345, 665230] strep_RK_lipo Inhibitor_I9 Peptidases_S8_C5a_Peptidase fn3_5 PTZ00121 RVT-GII GIIM Peptidase_M13_N M13 Neighborhood of RT #6 [773709, 779751] Cof PRK10416 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #7 [969998, 977799] PRK05433 Strep_his_triad Strep_his_triad Strep_his_triad LRR LRR_4 RVT-GII GIIM RnaY RimI Neighborhood of RT #8 [1162916, 1169180] COG4684 PGM2 RVT-GII GIIM Yip1 MdlB Neighborhood of RT #9 [1356240, 1365766] RVT_N RVT-GII GIIM N6_Mtase COG4646 KOG0390 Neighborhood of RT #10 [1373212, 1380987] Peptidase_M23 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM PrgI Neighborhood of RT #11 [1570063, 1576999] PBP2_GlnP PBP2_GlnP HisM GlnQ RVT-GII GIIM COG3666 DDE_Tnp_1_6 Neighborhood of RT #12 [1652037, 1656634] DUF4956 PolyPPase_VTC_like RVT-GII GIIM InsE Neighborhood of RT #13 [1940062, 1946652] PurR Hepar_II_III_N Hepar_II_III RVT-GII GIIM ManZ ManY Feature: gene Location: 104178-104729 bp Ori: QHO92461.1 Feature: domain Description: NTP_transf_6 Location: 104238-104718 bp Feature: domain Description: NTP_transf_6 Location: 1 04238-1 0471 8 bp Feature: gene Location: 104949-105368 bp Ori: QHO92462.1 Feature: domain Description: DUF2992 Location: 104958-105366 bp Feature: domain Description: DUF2992 Location: 1 04958-1 05366 bp Feature: gene Location: 105932-107209 bp Ori: QHO94429.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106136-106751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 061 36-1 06751 bp Feature: domain Description: GIIM Note: maturase Location: 106805-107021 bp Feature: domain Description: GIIM Note: maturase Location: 1 06805-1 07021 bp Feature: gene Location: 107470-107904 bp Feature: gene Location: 108026-108718 bp Ori: QHO92464.1 Feature: domain Description: PhoE Location: 108035-108695 bp Feature: domain Description: PhoE Location: 1 08035-1 08695 bp Feature: gene Location: 377395-378378 bp Ori: QHO92710.1 Feature: domain Description: DeoR Location: 377404-378340 bp Feature: domain Description: DeoR Location: 377404-378340 bp Feature: gene Location: 378582-378809 bp Feature: domain Description: CelC Location: 378600-378810 bp Feature: domain Description: CelC Location: 378600-37881 0 bp Feature: gene Location: 378896-380569 bp Ori: QHO92711.1 Gene: ltrA Feature: domain Description: RVT_N Location: 378968-379208 bp Feature: domain Description: RVT_N Location: 378968-379208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379256-379916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379256-37991 6 bp Feature: domain Description: GIIM Note: maturase Location: 379985-380204 bp Feature: domain Description: GIIM Note: maturase Location: 379985-380204 bp Feature: gene Location: 381115-381216 bp Feature: domain Description: CelC Location: 381124-381205 bp Feature: domain Description: CelC Location: 381 1 24-381 205 bp Feature: gene Location: 381233-381553 bp Ori: QHO92712.1 Feature: domain Description: CelA Location: 381236-381533 bp Feature: domain Description: CelA Location: 381 236-381 533 bp Feature: gene Location: 553273-553377 bp Feature: gene Location: 553415-553645 bp Ori: QHO92863.1 Feature: domain Description: YkuJ Location: 553421-553643 bp Feature: domain Description: YkuJ Location: 553421 -553643 bp Feature: gene Location: 554194-555471 bp Ori: QHO94445.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554398-555013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554398-55501 3 bp Feature: domain Description: GIIM Note: maturase Location: 555067-555283 bp Feature: domain Description: GIIM Note: maturase Location: 555067-555283 bp Feature: gene Location: 555643-556335 bp Ori: QHO92864.1 Feature: domain Description: HisM Location: 555652-556312 bp Feature: domain Description: HisM Location: 555652-55631 2 bp Feature: gene Location: 556328-557062 bp Ori: QHO92865.1 Gene: glnQ Feature: domain Description: GlnQ Location: 556343-557057 bp Feature: domain Description: GlnQ Location: 556343-557057 bp Feature: gene Location: 592105-592803 bp Ori: QHO92895.1 Feature: domain Description: TTHA1623-like_MBL-fold Location: 592204-592795 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 592204-592795 bp Feature: gene Location: 592971-593735 bp Ori: QHO92896.1 Feature: domain Description: PRK08643 Location: 592974-593733 bp Feature: domain Description: PRK08643 Location: 592974-593733 bp Feature: gene Location: 594298-595575 bp Ori: QHO94448.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594502-595117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594502-5951 1 7 bp Feature: domain Description: GIIM Note: maturase Location: 595171-595387 bp Feature: domain Description: GIIM Note: maturase Location: 5951 71 -595387 bp Feature: gene Location: 595701-598208 bp Ori: QHO92897.1 Feature: domain Description: PRK07246 Location: 595746-598206 bp Feature: domain Description: PRK07246 Location: 595746-598206 bp Feature: gene Location: 598294-599487 bp Ori: QHO92898.1 Feature: domain Description: PRK05764 Location: 598300-599473 bp Feature: domain Description: PRK05764 Location: 598300-599473 bp Feature: gene Location: 654345-654686 bp Feature: gene Location: 654720-661265 bp Feature: domain Description: strep_RK_lipo Location: 654750-654855 bp Feature: domain Description: strep_RK_lipo Location: 654750-654855 bp Feature: domain Description: Inhibitor_I9 Location: 655359-655641 bp Feature: domain Description: Inhibitor_I9 Location: 655359-655641 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 655698-657147 bp Feature: domain Description: Peptidases_S8_C5a_Peptidase Location: 655698-6571 47 bp Feature: domain Description: fn3_5 Location: 657210-657534 bp Feature: domain Description: fn3_5 Location: 65721 0-657534 bp Feature: domain Description: PTZ00121 Location: 660855-661107 bp Feature: domain Description: PTZ001 21 Location: 660855-661 1 07 bp Feature: gene Location: 661879-663156 bp Ori: QHO94450.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662083-662698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 662083-662698 bp Feature: domain Description: GIIM Note: maturase Location: 662752-662968 bp Feature: domain Description: GIIM Note: maturase Location: 662752-662968 bp Feature: gene Location: 663306-664391 bp Ori: QHO92957.1 Feature: domain Description: Peptidase_M13_N Location: 663444-664359 bp Feature: domain Description: Peptidase_M1 3_N Location: 663444-664359 bp Feature: gene Location: 664412-665230 bp Ori: QHO92958.1 Feature: domain Description: M13 Location: 664415-665117 bp Feature: domain Description: M1 3 Location: 66441 5-6651 1 7 bp Feature: gene Location: 773709-774533 bp Ori: QHO93048.1 Feature: domain Description: Cof Location: 773718-774519 bp Feature: domain Description: Cof Location: 77371 8-77451 9 bp Feature: gene Location: 774533-776143 bp Ori: QHO93049.1 Feature: domain Description: PRK10416 Location: 774872-776132 bp Feature: domain Description: PRK1 041 6 Location: 774872-7761 32 bp Feature: gene Location: 776694-777971 bp Ori: QHO94455.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776898-777513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 776898-77751 3 bp Feature: domain Description: GIIM Note: maturase Location: 777567-777783 bp Feature: domain Description: GIIM Note: maturase Location: 777567-777783 bp Feature: gene Location: 778037-778849 bp Ori: QHO93050.1 Feature: domain Description: YcgQ Location: 778040-778847 bp Feature: domain Description: YcgQ Location: 778040-778847 bp Feature: gene Location: 778849-779751 bp Ori: QHO93051.1 Feature: domain Description: YraQ Location: 778852-779749 bp Feature: domain Description: YraQ Location: 778852-779749 bp Feature: gene Location: 969998-971830 bp Ori: QHO93220.1 Feature: domain Description: PRK05433 Location: 970022-971816 bp Feature: domain Description: PRK05433 Location: 970022-971 81 6 bp Feature: gene Location: 972077-974710 bp Ori: QHO93221.1 Feature: domain Description: Strep_his_triad Location: 972281-972398 bp Feature: domain Description: Strep_his_triad Location: 972281 -972398 bp Feature: domain Description: Strep_his_triad Location: 972497-972623 bp Feature: domain Description: Strep_his_triad Location: 972497-972623 bp Feature: domain Description: Strep_his_triad Location: 972710-972821 bp Feature: domain Description: Strep_his_triad Location: 97271 0-972821 bp Feature: domain Description: LRR Location: 973583-973970 bp Feature: domain Description: LRR Location: 973583-973970 bp Feature: domain Description: LRR_4 Location: 974258-974369 bp Feature: domain Description: LRR_4 Location: 974258-974369 bp Feature: gene Location: 974794-976071 bp Ori: QHO94460.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974998-975613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974998-97561 3 bp Feature: domain Description: GIIM Note: maturase Location: 975667-975883 bp Feature: domain Description: GIIM Note: maturase Location: 975667-975883 bp Feature: gene Location: 976667-977326 bp Ori: QHO93222.1 Feature: domain Description: RnaY Location: 976709-977321 bp Feature: domain Description: RnaY Location: 976709-977321 bp Feature: gene Location: 977335-977799 bp Ori: QHO93223.1 Feature: domain Description: RimI Location: 977341-977773 bp Feature: domain Description: RimI Location: 977341 -977773 bp Feature: gene Location: 1162916-1163488 bp Ori: QHO93415.1 Feature: domain Description: COG4684 Location: 1162919-1163483 bp Feature: domain Description: COG4684 Location: 1 1 6291 9-1 1 63483 bp Feature: gene Location: 1163598-1165316 bp Ori: QHO93416.1 Feature: domain Description: PGM2 Location: 1163715-1165290 bp Feature: domain Description: PGM2 Location: 1 1 6371 5-1 1 65290 bp Feature: gene Location: 1165868-1167145 bp Ori: QHO94466.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1166072-1166687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 66072-1 1 66687 bp Feature: domain Description: GIIM Note: maturase Location: 1166741-1166957 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 66741 -1 1 66957 bp Feature: gene Location: 1167236-1167460 bp Ori: QHO93417.1 Feature: domain Description: Yip1 Location: 1167278-1167437 bp Feature: domain Description: Yip1 Location: 1 1 67278-1 1 67437 bp Feature: gene Location: 1167447-1169180 bp Ori: QHO93418.1 Feature: domain Description: MdlB Location: 1167483-1169175 bp Feature: domain Description: MdlB Location: 1 1 67483-1 1 691 75 bp Feature: gene Location: 1356240-1356539 bp Feature: gene Location: 1356609-1357418 bp Feature: gene Location: 1357552-1359210 bp Ori: QHO93596.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1357597-1357840 bp Feature: domain Description: RVT_N Location: 1 357597-1 357840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1357885-1358533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 357885-1 358533 bp Feature: domain Description: GIIM Note: maturase Location: 1358590-1358818 bp Feature: domain Description: GIIM Note: maturase Location: 1 358590-1 35881 8 bp Feature: gene Location: 1359410-1359595 bp Feature: gene Location: 1359770-1365766 bp Ori: QHO93598.1 Feature: domain Description: N6_Mtase Location: 1361783-1362374 bp Feature: domain Description: N6_Mtase Location: 1 361 783-1 362374 bp Feature: domain Description: COG4646 Location: 1362965-1365269 bp Feature: domain Description: COG4646 Location: 1 362965-1 365269 bp Feature: domain Description: KOG0390 Location: 1365539-1365737 bp Feature: domain Description: KOG0390 Location: 1 365539-1 365737 bp Feature: gene Location: 1373212-1376013 bp Ori: QHO93604.1 Feature: domain Description: Peptidase_M23 Location: 1374655-1374868 bp Feature: domain Description: Peptidase_M23 Location: 1 374655-1 374868 bp Feature: domain Description: Phage_lysozyme2 Location: 1375009-1375522 bp Feature: domain Description: Phage_lysozyme2 Location: 1 375009-1 375522 bp Feature: domain Description: PRK08581 Location: 1375639-1375975 bp Feature: domain Description: PRK08581 Location: 1 375639-1 375975 bp Feature: gene Location: 1376015-1376977 bp Ori: QHO93605.1 Feature: domain Description: TraC-F-type Location: 1376108-1376804 bp Feature: domain Description: TraC-F-type Location: 1 3761 08-1 376804 bp Feature: gene Location: 1376982-1378655 bp Ori: QHO93606.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1377054-1377294 bp Feature: domain Description: RVT_N Location: 1 377054-1 377294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1377342-1378002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 377342-1 378002 bp Feature: domain Description: GIIM Note: maturase Location: 1378071-1378290 bp Feature: domain Description: GIIM Note: maturase Location: 1 378071 -1 378290 bp Feature: gene Location: 1379184-1380656 bp Feature: gene Location: 1380634-1380987 bp Ori: QHO93608.1 Feature: domain Description: PrgI Location: 1380646-1380919 bp Feature: domain Description: PrgI Location: 1 380646-1 38091 9 bp Feature: gene Location: 1570063-1572246 bp Ori: QHO93768.1 Feature: domain Description: PBP2_GlnP Location: 1570147-1570801 bp Feature: domain Description: PBP2_GlnP Location: 1 5701 47-1 570801 bp Feature: domain Description: PBP2_GlnP Location: 1570879-1571530 bp Feature: domain Description: PBP2_GlnP Location: 1 570879-1 571 530 bp Feature: domain Description: HisM Location: 1571599-1572244 bp Feature: domain Description: HisM Location: 1 571 599-1 572244 bp Feature: gene Location: 1572246-1572986 bp Ori: QHO93769.1 Feature: domain Description: GlnQ Location: 1572264-1572975 bp Feature: domain Description: GlnQ Location: 1 572264-1 572975 bp Feature: gene Location: 1573536-1574813 bp Ori: QHO94481.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1573740-1574355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 573740-1 574355 bp Feature: domain Description: GIIM Note: maturase Location: 1574409-1574625 bp Feature: domain Description: GIIM Note: maturase Location: 1 574409-1 574625 bp Feature: gene Location: 1574993-1575343 bp Feature: gene Location: 1575542-1576999 bp Ori: QHO93771.1 Feature: domain Description: COG3666 Location: 1575554-1576031 bp Feature: domain Description: COG3666 Location: 1 575554-1 576031 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1576505-1576859 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 576505-1 576859 bp Feature: gene Location: 1652037-1652714 bp Ori: QHO93843.1 Feature: domain Description: DUF4956 Location: 1652124-1652487 bp Feature: domain Description: DUF4956 Location: 1 6521 24-1 652487 bp Feature: gene Location: 1652766-1653461 bp Ori: QHO93844.1 Feature: domain Description: PolyPPase_VTC_like Location: 1652784-1653426 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 652784-1 653426 bp Feature: gene Location: 1653811-1655088 bp Ori: QHO94488.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654015-1654630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65401 5-1 654630 bp Feature: domain Description: GIIM Note: maturase Location: 1654684-1654900 bp Feature: domain Description: GIIM Note: maturase Location: 1 654684-1 654900 bp Feature: gene Location: 1655490-1655724 bp Ori: QHO93845.1 Feature: domain Description: InsE Location: 1655502-1655724 bp Feature: domain Description: InsE Location: 1 655502-1 655724 bp Feature: gene Location: 1655724-1656634 bp Feature: gene Location: 1940062-1941063 bp Ori: QHO94122.1 Feature: domain Description: PurR Location: 1940077-1941058 bp Feature: domain Description: PurR Location: 1 940077-1 941 058 bp Feature: gene Location: 1941143-1943047 bp Ori: QHO94123.1 Feature: domain Description: Hepar_II_III_N Location: 1941224-1942010 bp Feature: domain Description: Hepar_II_III_N Location: 1 941 224-1 94201 0 bp Feature: domain Description: Hepar_II_III Location: 1942172-1942616 bp Feature: domain Description: Hepar_II_III Location: 1 9421 72-1 94261 6 bp Feature: gene Location: 1943138-1944415 bp Ori: QHO94494.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1943342-1943957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 943342-1 943957 bp Feature: domain Description: GIIM Note: maturase Location: 1944011-1944227 bp Feature: domain Description: GIIM Note: maturase Location: 1 94401 1 -1 944227 bp Feature: gene Location: 1944984-1945799 bp Ori: QHO94124.1 Feature: domain Description: ManZ Location: 1944987-1945794 bp Feature: domain Description: ManZ Location: 1 944987-1 945794 bp Feature: gene Location: 1945786-1946652 bp Ori: QHO94125.1 Feature: domain Description: ManY Location: 1945795-1946644 bp Feature: domain Description: ManY Location: 1 945795-1 946644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transf_6 (pfam06042), DUF2992 (pfam11208), RVT-GII, GIIM (pfam08388), PhoE (COG0406), DeoR (COG2390), CelC (COG1447), RVT_N (pfam13655), CelA (TIGR03030), YkuJ (COG4703)
HisM (COG0765), GlnQ (COG1126), TTHA1623-like_MBL-fold (cd16322), PRK08643 ((S)-acetoin forming diacetyl reductase), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), strep_RK_lipo (TIGR03726), Inhibitor_I9 (pfam05922), Peptidases_S8_C5a_Peptidase (cd07475), fn3_5 (pfam06280)
PTZ00121 (MAEBL; Provisional), Peptidase_M13_N (pfam05649), M13 (cd08662), Cof (COG0561), PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689), YraQ (COG0701), PRK05433 (GTP-binding protein LepA; Provisional), Strep_his_triad (pfam04270), LRR (smart00370)
LRR_4 (pfam12799), RnaY (COG1418), RimI (COG0456), COG4684 (Uncharacterized membrane protein ), PGM2 (cd05799), Yip1 (pfam04893), MdlB (COG1132), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family )
Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), TraC-F-type (TIGR02746), PrgI (pfam12666), PBP2_GlnP (cd13619), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750)
InsE (COG2963), PurR (COG1609), Hepar_II_III_N (pfam16889), Hepar_II_III (pfam07940), ManZ (COG3716), ManY (COG3715)