myRT

myRT report for GCA_009931255.1_ASM993125v1

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Seq: CP034432.1 Bradyrhizobium sp. LCT2 chromosome, complete genome (9434376 bp)
Overview 1 RT 1: 1957005-1965322 bp 2 RT 2: 2353098-2356480 bp 3 RT 3: 2417037-2422627 bp 4 RT 4: 3470010-3473619 bp 5 RT 5: 8252379-8255622 bp 6 RT 6: 8394491-8398702 bp 7 RT 7: 9421375-9426634 bp Neighborhood of RT #1 [1957005, 1965327] RVT-GII PHA00617 RVT-GII COG3533 Neighborhood of RT #2 [2353098, 2356581] RVT-GII DUF772 DDE_Tnp_1 DDE_Tnp_1 Neighborhood of RT #3 [2417037, 2422627] DNA_pol_III_epsilon_like COG3547 RVT-GII GIIM PRK06215 Neighborhood of RT #4 [3470010, 3473619] RVT-G2L SRAP Neighborhood of RT #5 [8252379, 8255622] RVT-GII Neighborhood of RT #6 [8394491, 8398842] COG3547 RVT-GII COG3547 DDE_3 Neighborhood of RT #7 [9421375, 9427317] COG3436 InsE rve Tra5 RVT-GII rve Feature: gene Location: 1957005-1957270 bp Feature: gene Location: 1957573-1957755 bp Feature: gene Location: 1957752-1958345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957956-1958346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 957956-1 958346 bp Feature: gene Location: 1958334-1959982 bp Feature: gene Location: 1960123-1960452 bp Ori: QHP67762.1 Feature: domain Description: PHA00617 Location: 1960249-1960435 bp Feature: domain Description: PHA0061 7 Location: 1 960249-1 960435 bp Feature: gene Location: 1960569-1961214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1960572-1960773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 960572-1 960773 bp Feature: gene Location: 1961291-1962156 bp Feature: gene Location: 1963363-1965327 bp Ori: QHP67763.1 Feature: domain Description: COG3533 Location: 1963378-1965322 bp Feature: domain Description: COG3533 Location: 1 963378-1 965322 bp Feature: gene Location: 2353098-2353343 bp Feature: gene Location: 2353830-2354159 bp Feature: gene Location: 2354166-2355065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2354574-2355066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2354574-2355066 bp Feature: gene Location: 2355068-2355315 bp Feature: gene Location: 2355235-2356581 bp Ori: QHP67997.1 Feature: domain Description: DUF772 Location: 2355394-2355613 bp Feature: domain Description: DUF772 Location: 2355394-235561 3 bp Feature: domain Description: DDE_Tnp_1 Location: 2356066-2356285 bp Feature: domain Description: DDE_Tnp_1 Location: 2356066-2356285 bp Feature: domain Description: DDE_Tnp_1 Location: 2356354-2356480 bp Feature: domain Description: DDE_Tnp_1 Location: 2356354-2356480 bp Feature: gene Location: 2417037-2417375 bp Ori: QHP74161.1 Feature: domain Description: DNA_pol_III_epsilon_like Location: 2417040-2417307 bp Feature: domain Description: DNA_pol_III_epsilon_like Location: 241 7040-241 7307 bp Feature: gene Location: 2417511-2417729 bp Feature: domain Description: COG3547 Location: 2417517-2417730 bp Feature: domain Description: COG3547 Location: 241 751 7-241 7730 bp Feature: gene Location: 2418216-2419538 bp Ori: QHP68033.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2418510-2419167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 851 0-241 91 67 bp Feature: domain Description: GIIM Note: maturase Location: 2419242-2419446 bp Feature: domain Description: GIIM Note: maturase Location: 241 9242-241 9446 bp Feature: gene Location: 2420391-2421128 bp Ori: QHP68034.1 Feature: domain Description: PRK06215 Location: 2420400-2421123 bp Feature: domain Description: PRK0621 5 Location: 2420400-2421 1 23 bp Feature: gene Location: 2421184-2422627 bp Feature: gene Location: 3470010-3470258 bp Feature: gene Location: 3470365-3470622 bp Feature: gene Location: 3471078-3472466 bp Ori: QHP68922.1 Feature: RT Description: RVT-G2L Note: G2L RT Location: 3471441-3472101 bp Feature: RT Description: RVT-G2L Note: G2L RT Location: 3471 441 -34721 01 bp Feature: gene Location: 3472487-3473158 bp Ori: QHP68923.1 Feature: domain Description: SRAP Location: 3472490-3473123 bp Feature: domain Description: SRAP Location: 3472490-34731 23 bp Feature: gene Location: 3473194-3473619 bp Feature: gene Location: 8252379-8252599 bp Feature: gene Location: 8252587-8252847 bp Feature: gene Location: 8252808-8253826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8252817-8253312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825281 7-825331 2 bp Feature: gene Location: 8254054-8254437 bp Feature: gene Location: 8255380-8255622 bp Feature: gene Location: 8394491-8395259 bp Feature: gene Location: 8395514-8396290 bp Feature: domain Description: COG3547 Location: 8395520-8396249 bp Feature: domain Description: COG3547 Location: 8395520-8396249 bp Feature: gene Location: 8396401-8397721 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8396695-8396890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8396695-8396890 bp Feature: gene Location: 8398207-8398454 bp Feature: domain Description: COG3547 Location: 8398225-8398393 bp Feature: domain Description: COG3547 Location: 8398225-8398393 bp Feature: gene Location: 8398534-8398842 bp Feature: domain Description: DDE_3 Location: 8398540-8398702 bp Feature: domain Description: DDE_3 Location: 8398540-8398702 bp Feature: gene Location: 9421375-9421694 bp Feature: domain Description: COG3436 Location: 9421378-9421501 bp Feature: domain Description: COG3436 Location: 9421 378-9421 501 bp Feature: gene Location: 9421779-9423111 bp Feature: domain Description: InsE Location: 9421842-9422103 bp Feature: domain Description: InsE Location: 9421 842-94221 03 bp Feature: domain Description: rve Location: 9422535-9422679 bp Feature: domain Description: rve Location: 9422535-9422679 bp Feature: domain Description: Tra5 Location: 9422895-9423099 bp Feature: domain Description: Tra5 Location: 9422895-9423099 bp Feature: gene Location: 9423230-9424357 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9423434-9423779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9423434-9423779 bp Feature: gene Location: 9424907-9425653 bp Feature: gene Location: 9425806-9427317 bp Ori: QHP74032.1 Feature: domain Description: rve Location: 9426313-9426634 bp Feature: domain Description: rve Location: 942631 3-9426634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA00617 (ribbon-helix-helix domain containing protein), COG3533 (Uncharacterized conserved protein, DUF1680 family ), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), DNA_pol_III_epsilon_like (cd06130), COG3547 (Transposase ), GIIM (pfam08388), PRK06215 (hypothetical protein; Provisional), RVT-G2L
SRAP (pfam02586), DDE_3 (pfam13358), COG3436 (Transposase ), InsE (COG2963), rve (pfam00665), Tra5 (COG2801)