myRT

myRT report for GCA_009931435.1_ASM993143v1

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Seq: CP043414.1 Escherichia coli strain EC42405 chromosome, complete genome (5133009 bp)
Overview 1 RT 1: 161991-165867 bp 2 RT 2: 2035901-2040509 bp Neighborhood of RT #1 [161991, 165872] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [2035901, 2040571] InsE RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 161991-162707 bp Ori: QHP97559.1 Feature: domain Description: rph Location: 161994-162702 bp Feature: domain Description: rph Location: 1 61 994-1 62702 bp Feature: gene Location: 162773-163414 bp Ori: QHP97560.1 Gene: pyrE Feature: domain Description: pyrE Location: 162776-163409 bp Feature: domain Description: pyrE Location: 1 62776-1 63409 bp Feature: gene Location: 163711-164670 bp Ori: QHP97561.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163846-164395 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 63846-1 64395 bp Feature: gene Location: 164714-165310 bp Ori: QHP97562.1 Gene: slmA Feature: domain Description: slmA Location: 164720-165296 bp Feature: domain Description: slmA Location: 1 64720-1 65296 bp Feature: gene Location: 165417-165872 bp Ori: QHQ01881.1 Feature: domain Description: dut Location: 165420-165867 bp Feature: domain Description: dut Location: 1 65420-1 65867 bp Feature: gene Location: 2035901-2036640 bp Feature: domain Description: InsE Location: 2035904-2036243 bp Feature: domain Description: InsE Location: 2035904-2036243 bp Feature: gene Location: 2036633-2037004 bp Feature: gene Location: 2037313-2038821 bp Ori: QHQ01947.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2037571-2038303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2037571 -2038303 bp Feature: domain Description: GIIM Note: maturase Location: 2038378-2038576 bp Feature: domain Description: GIIM Note: maturase Location: 2038378-2038576 bp Feature: gene Location: 2038911-2039384 bp Feature: domain Description: PHA02517 Location: 2038917-2039382 bp Feature: domain Description: PHA0251 7 Location: 203891 7-2039382 bp Feature: gene Location: 2039543-2040571 bp Feature: domain Description: COG3547 Location: 2040248-2040509 bp Feature: domain Description: COG3547 Location: 2040248-2040509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )

Seq: CP043415.1 Escherichia coli strain EC42405 plasmid pNTEC2-42405, complete sequence (138121 bp)
Overview 1 RT 1: 43815-50110 bp 2 RT 2: 114497-118067 bp Neighborhood of RT #1 [43815, 50172] HlyC RVT-GII PHA02517 DUF4765 CNF1-like Neighborhood of RT #2 [114497, 118067] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 43815-44321 bp Ori: QHQ02099.1 Feature: domain Description: HlyC Location: 43836-44196 bp Feature: domain Description: HlyC Location: 43836-44196 bp Feature: gene Location: 44333-45142 bp Feature: gene Location: 45732-46267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45873-45954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45873-45954 bp Feature: gene Location: 46530-46991 bp Feature: domain Description: PHA02517 Location: 46533-46980 bp Feature: domain Description: PHA02 517 Location: 46533-46980 bp Feature: gene Location: 47128-50172 bp Ori: QHQ02100.1 Gene: cnf2 Feature: domain Description: DUF4765 Location: 48793-49222 bp Feature: domain Description: DUF4765 Location: 48793-492 2 2 bp Feature: domain Description: CNF1-like Location: 49615-50110 bp Feature: domain Description: CNF1-like Location: 49615-50110 bp Feature: gene Location: 114497-114801 bp Feature: gene Location: 114805-115707 bp Ori: QHQ02173.1 Feature: domain Description: DUF1281 Location: 114874-115402 bp Feature: domain Description: DUF12 81 Location: 114874-115402 bp Feature: domain Description: DUF1281_C Location: 115408-115648 bp Feature: domain Description: DUF12 81_C Location: 115408-115648 bp Feature: gene Location: 115784-117508 bp Ori: QHQ02174.1 Gene: ltrA Feature: domain Description: RVT_N Location: 115841-116078 bp Feature: domain Description: RVT_N Location: 115841-116078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116129-116777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11612 9-116777 bp Feature: domain Description: YkfC Location: 116909-117065 bp Feature: domain Description: YkfC Location: 116909-117065 bp Feature: domain Description: HNHc Note: nucleases Location: 117293-117452 bp Feature: domain Description: HNHc Note: nucleases Location: 1172 93-117452 bp Feature: gene Location: 117530-117744 bp Feature: gene Location: 117771-118067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HlyC (pfam02794), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), DUF4765 (pfam15962), CNF1-like (cd16834), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), YkfC (COG3344), HNHc (smart00507)