myRT

myRT report for GCA_009933525.1_ASM993352v1

Download annotations/find similar RTs

Seq: CP047142.1 Lactobacillus crispatus strain C25 chromosome, complete genome (2145933 bp)
Overview 1 RT 1: 642323-645939 bp 2 RT 2: 1258869-1263299 bp 3 RT 3: 1269743-1274982 bp 4 RT 4: 1852589-1861253 bp Neighborhood of RT #1 [642323, 645939] DUF3100 RVT-GII TIGR02452 SlpA Neighborhood of RT #2 [1258869, 1263487] PRK09311 ribH RVT-GII Tra8 ABC2_membrane_4 Neighborhood of RT #3 [1269743, 1274990] ManY ManZ RVT-GII GIIM Tra8 Glyco_hydro_8 Neighborhood of RT #4 [1852589, 1861253] Glyco_hydro_68 Abi_2 RVT-AbiK Transposase_mut Feature: gene Location: 642323-643141 bp Ori: QHQ67681.1 Feature: domain Description: DUF3100 Location: 642383-643085 bp Feature: domain Description: DUF31 00 Location: 642383-643085 bp Feature: gene Location: 643134-643625 bp Feature: gene Location: 643738-644277 bp Ori: QHQ68991.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643741-643966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643741 -643966 bp Feature: domain Description: TIGR02452 Location: 644038-644263 bp Feature: domain Description: TIGR02452 Location: 644038-644263 bp Feature: gene Location: 644362-645141 bp Ori: QHQ67683.1 Feature: domain Description: SlpA Location: 644977-645133 bp Feature: domain Description: SlpA Location: 644977-6451 33 bp Feature: gene Location: 645346-645939 bp Feature: gene Location: 1258869-1260047 bp Ori: QHQ68189.1 Feature: domain Description: PRK09311 Location: 1258878-1260039 bp Feature: domain Description: PRK0931 1 Location: 1 258878-1 260039 bp Feature: gene Location: 1260062-1260526 bp Ori: QHQ68190.1 Feature: domain Description: ribH Location: 1260065-1260521 bp Feature: domain Description: ribH Location: 1 260065-1 260521 bp Feature: gene Location: 1260604-1261326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1260637-1260994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 260637-1 260994 bp Feature: gene Location: 1261686-1262610 bp Feature: domain Description: Tra8 Location: 1261716-1262118 bp Feature: domain Description: Tra8 Location: 1 261 71 6-1 2621 1 8 bp Feature: gene Location: 1262738-1263487 bp Ori: QHQ68191.1 Feature: domain Description: ABC2_membrane_4 Location: 1262750-1263299 bp Feature: domain Description: ABC2_membrane_4 Location: 1 262750-1 263299 bp Feature: gene Location: 1269743-1270555 bp Ori: QHQ68199.1 Feature: domain Description: ManY Location: 1269752-1270526 bp Feature: domain Description: ManY Location: 1 269752-1 270526 bp Feature: gene Location: 1270524-1271345 bp Ori: QHQ68200.1 Feature: domain Description: ManZ Location: 1270554-1271340 bp Feature: domain Description: ManZ Location: 1 270554-1 271 340 bp Feature: gene Location: 1271411-1272463 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1271414-1271972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 271 41 4-1 271 972 bp Feature: domain Description: GIIM Note: maturase Location: 1272026-1272239 bp Feature: domain Description: GIIM Note: maturase Location: 1 272026-1 272239 bp Feature: gene Location: 1272853-1273775 bp Feature: domain Description: Tra8 Location: 1272883-1273285 bp Feature: domain Description: Tra8 Location: 1 272883-1 273285 bp Feature: gene Location: 1273893-1274990 bp Ori: QHQ68201.1 Feature: domain Description: Glyco_hydro_8 Location: 1274007-1274982 bp Feature: domain Description: Glyco_hydro_8 Location: 1 274007-1 274982 bp Feature: gene Location: 1852589-1854586 bp Ori: QHQ68691.1 Feature: domain Description: Glyco_hydro_68 Location: 1853147-1854482 bp Feature: domain Description: Glyco_hydro_68 Location: 1 8531 47-1 854482 bp Feature: gene Location: 1854844-1855830 bp Ori: QHQ68692.1 Feature: domain Description: Abi_2 Location: 1854946-1855570 bp Feature: domain Description: Abi_2 Location: 1 854946-1 855570 bp Feature: gene Location: 1856232-1858199 bp Ori: QHQ68693.1 Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 1856652-1857114 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 1 856652-1 8571 1 4 bp Feature: gene Location: 1858814-1859992 bp Ori: QHQ68694.1 Feature: domain Description: Transposase_mut Location: 1858853-1859930 bp Feature: domain Description: Transposase_mut Location: 1 858853-1 859930 bp Feature: gene Location: 1860939-1861253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3100 (pfam11299), RVT-GII, TIGR02452 (TIGR02452 family protein), SlpA (COG1047), PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), ribH (PRK00061), Tra8 (COG2826), ABC2_membrane_4 (pfam12730), ManY (COG3715), ManZ (COG3716)
GIIM (pfam08388), Glyco_hydro_8 (pfam01270), Glyco_hydro_68 (pfam02435), Abi_2 (pfam07751), RVT-AbiK, Transposase_mut (pfam00872)