myRT

myRT report for GCA_009937955.1_ASM993795v1

Download annotations/find similar RTs

Seq: AP018440.1 Undibacterium sp. KW1 plasmid pUKW01 DNA, complete genome (135601 bp)
Overview 1 RT 1: 93715-97428 bp Neighborhood of RT #1 [93715, 97571] InsE PHA02517 RVT-GII GIIM PHA02517 SIMPL Feature: gene Location: 93715-94026 bp Ori: BBB64213.1 Feature: domain Description: InsE Location: 93727-94006 bp Feature: domain Description: InsE Location: 93727-94006 bp Feature: gene Location: 94023-94433 bp Ori: BBB64214.1 Feature: domain Description: PHA02517 Location: 94074-94410 bp Feature: domain Description: PHA0251 7 Location: 94074-9441 0 bp Feature: gene Location: 94886-96166 bp Ori: BBB64215.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95123-95780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 23-95780 bp Feature: domain Description: GIIM Note: maturase Location: 95858-96080 bp Feature: domain Description: GIIM Note: maturase Location: 95858-96080 bp Feature: gene Location: 96219-96716 bp Ori: BBB64216.1 Feature: domain Description: PHA02517 Location: 96249-96681 bp Feature: domain Description: PHA0251 7 Location: 96249-96681 bp Feature: gene Location: 96819-97571 bp Ori: BBB64217.1 Feature: domain Description: SIMPL Location: 96939-97428 bp Feature: domain Description: SIMPL Location: 96939-97428 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), SIMPL (pfam04402)

Seq: AP018439.1 Undibacterium sp. KW1 DNA, complete genome (6557365 bp)
Overview 1 RT 1: 635901-644854 bp 2 RT 2: 1131008-1134909 bp 3 RT 3: 1844505-1847967 bp 4 RT 4: 2794313-2798617 bp 5 RT 5: 5289283-5293963 bp 6 RT 6: 5742396-5748407 bp Neighborhood of RT #1 [635901, 644877] HEAT_2 PHB_acc RVT-Retrons RAYT COG4700 Neighborhood of RT #2 [1131008, 1134911] RVT-Retrons InsE PHA02517 Neighborhood of RT #3 [1844505, 1848050] Lar_restr_allev RVT-DGRs PAPS_reductase Avd_like Neighborhood of RT #4 [2794313, 2798617] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [5289283, 5293963] PRK13394 RVT-UG7 PduO Neighborhood of RT #6 [5742396, 5748407] PhoD GstA RVT-Retrons YgdD Feature: gene Location: 635901-639206 bp Ori: BBB58862.1 Feature: domain Description: HEAT_2 Location: 636339-636552 bp Feature: domain Description: HEAT_2 Location: 636339-636552 bp Feature: domain Description: PHB_acc Location: 638820-638889 bp Feature: domain Description: PHB_acc Location: 63882 0-638889 bp Feature: gene Location: 639203-640861 bp Feature: gene Location: 641269-643212 bp Ori: BBB58864.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 641857-642475 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 641857-642 475 bp Feature: gene Location: 643308-643628 bp Ori: BBB58865.1 Feature: domain Description: RAYT Location: 643395-643539 bp Feature: domain Description: RAYT Location: 643395-643539 bp Feature: gene Location: 644128-644877 bp Ori: BBB58866.1 Feature: domain Description: COG4700 Location: 644131-644854 bp Feature: domain Description: COG4700 Location: 644131-644854 bp Feature: gene Location: 1131008-1131460 bp Feature: gene Location: 1131860-1132858 bp Feature: gene Location: 1133138-1133584 bp Ori: BBB59299.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1133141-1133351 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1133141-1133351 bp Feature: gene Location: 1133728-1134024 bp Ori: BBB59300.1 Feature: domain Description: InsE Location: 1133749-1134019 bp Feature: domain Description: InsE Location: 1133749-1134019 bp Feature: gene Location: 1134021-1134911 bp Ori: BBB59301.1 Feature: domain Description: PHA02517 Location: 1134090-1134909 bp Feature: domain Description: PHA02 517 Location: 1134090-1134909 bp Feature: gene Location: 1844505-1844918 bp Ori: BBB59898.1 Feature: domain Description: Lar_restr_allev Location: 1844523-1844673 bp Feature: domain Description: Lar_restr_allev Location: 184452 3-1844673 bp Feature: gene Location: 1844945-1845160 bp Feature: gene Location: 1845154-1846314 bp Ori: BBB59900.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1845397-1846084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1845397-1846084 bp Feature: gene Location: 1846259-1847467 bp Ori: BBB59901.1 Feature: domain Description: PAPS_reductase Location: 1846388-1847159 bp Feature: domain Description: PAPS_reductase Location: 1846388-1847159 bp Feature: gene Location: 1847634-1848050 bp Ori: BBB59902.1 Feature: domain Description: Avd_like Location: 1847661-1847967 bp Feature: domain Description: Avd_like Location: 1847661-1847967 bp Feature: gene Location: 2794313-2794624 bp Ori: BBB60801.1 Feature: domain Description: InsE Location: 2794325-2794604 bp Feature: domain Description: InsE Location: 2 79432 5-2 794604 bp Feature: gene Location: 2794630-2795031 bp Ori: BBB60802.1 Feature: domain Description: PHA02517 Location: 2794672-2795008 bp Feature: domain Description: PHA02 517 Location: 2 794672 -2 795008 bp Feature: gene Location: 2795523-2796764 bp Ori: BBB60803.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2795721-2796378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 79572 1-2 796378 bp Feature: domain Description: GIIM Note: maturase Location: 2796456-2796678 bp Feature: domain Description: GIIM Note: maturase Location: 2 796456-2 796678 bp Feature: gene Location: 2796817-2797167 bp Ori: BBB60804.1 Feature: domain Description: PHA02517 Location: 2796847-2797159 bp Feature: domain Description: PHA02 517 Location: 2 796847-2 797159 bp Feature: gene Location: 2798327-2798617 bp Feature: gene Location: 5289283-5290065 bp Ori: BBB63030.1 Gene: bdhA Feature: domain Description: PRK13394 Location: 5289292-5290063 bp Feature: domain Description: PRK13394 Location: 52 892 92 -52 90063 bp Feature: gene Location: 5290146-5290907 bp Feature: gene Location: 5290904-5292505 bp Ori: BBB63032.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 5291294-5291714 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 52 912 94-52 91714 bp Feature: gene Location: 5292690-5293241 bp Ori: BBB63033.1 Feature: domain Description: PduO Location: 5292699-5293233 bp Feature: domain Description: PduO Location: 52 92 699-52 932 33 bp Feature: gene Location: 5293277-5293963 bp Feature: gene Location: 5742396-5744021 bp Ori: BBB63459.1 Gene: phoD Feature: domain Description: PhoD Location: 5742459-5743995 bp Feature: domain Description: PhoD Location: 5742 459-5743995 bp Feature: gene Location: 5744293-5744904 bp Ori: BBB63460.1 Feature: domain Description: GstA Location: 5744311-5744890 bp Feature: domain Description: GstA Location: 5744311-5744890 bp Feature: gene Location: 5745105-5746502 bp Ori: BBB63461.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5745618-5746254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5745618-57462 54 bp Feature: gene Location: 5746510-5746881 bp Ori: BBB63462.1 Feature: domain Description: YgdD Location: 5746522-5746876 bp Feature: domain Description: YgdD Location: 574652 2 -5746876 bp Feature: gene Location: 5747037-5748407 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), PHB_acc (pfam05233), RVT-Retrons, RAYT (COG1943), COG4700 (Uncharacterized protein ), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Lar_restr_allev (pfam14354), RVT-DGRs, PAPS_reductase (TIGR02057)
Avd_like (cd16376), RVT-GII, GIIM (pfam08388), PRK13394 (3-hydroxybutyrate dehydrogenase; Provisional), RVT-UG7, PduO (COG2096), PhoD (pfam09423), GstA (COG0625), YgdD (COG2363)