myRT

myRT report for GCA_009937975.1_ASM993797v1

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Seq: AP018441.1 Undibacterium sp. YM2 DNA, complete genome (6484812 bp)
Overview 1 RT 1: 3558-11294 bp 2 RT 2: 576863-585795 bp 3 RT 3: 1198268-1205852 bp 4 RT 4: 1815002-1818078 bp 5 RT 5: 4040366-4047632 bp 6 RT 6: 5632229-5637280 bp Neighborhood of RT #1 [3558, 11299] gyrB PIN_VapC_N-like RVT-Retrons Trypsin_2 LpqC PRK12553 Neighborhood of RT #2 [576863, 585896] HEAT_2 RVT-Retrons COG4700 Cache_2 Neighborhood of RT #3 [1198268, 1205890] nitrilase RVT-UG5 miaA MFS_MdfA_MDR_like Neighborhood of RT #4 [1815002, 1818078] RVT-DGRs Neighborhood of RT #5 [4040366, 4047632] BDS1 CSP_CDS RVT-Retrons OM_YfiO Neighborhood of RT #6 [5632229, 5637321] PhoD GstA RVT-Retrons YgdD MarR Feature: gene Location: 3558-6053 bp Ori: BBB64256.1 Gene: gyrB Feature: domain Description: gyrB Location: 3594-6051 bp Feature: domain Description: gyrB Location: 3594-6051 bp Feature: gene Location: 6343-7212 bp Ori: BBB64257.1 Feature: domain Description: PIN_VapC_N-like Location: 6352-6730 bp Feature: domain Description: PIN_VapC_N-like Location: 6352-6730 bp Feature: gene Location: 7247-8521 bp Ori: BBB64258.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7253-7460 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7253-7460 bp Feature: domain Description: Trypsin_2 Location: 7937-8420 bp Feature: domain Description: Trypsin_2 Location: 7937-8420 bp Feature: gene Location: 9372-10322 bp Ori: BBB64259.1 Feature: domain Description: LpqC Location: 9459-10317 bp Feature: domain Description: LpqC Location: 9459-1 031 7 bp Feature: gene Location: 10721-11299 bp Ori: BBB64260.1 Gene: clpP3 Feature: domain Description: PRK12553 Location: 10742-11294 bp Feature: domain Description: PRK1 2553 Location: 1 0742-1 1 294 bp Feature: gene Location: 576863-580177 bp Ori: BBB64808.1 Feature: domain Description: HEAT_2 Location: 577316-577523 bp Feature: domain Description: HEAT_2 Location: 57731 6-577523 bp Feature: gene Location: 580174-581829 bp Feature: gene Location: 582216-584159 bp Ori: BBB64810.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 582804-583422 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 582804-583422 bp Feature: gene Location: 584412-585161 bp Ori: BBB64811.1 Feature: domain Description: COG4700 Location: 584415-585138 bp Feature: domain Description: COG4700 Location: 58441 5-5851 38 bp Feature: gene Location: 585504-585896 bp Ori: BBB64812.1 Feature: domain Description: Cache_2 Location: 585585-585795 bp Feature: domain Description: Cache_2 Location: 585585-585795 bp Feature: gene Location: 1198268-1199254 bp Feature: gene Location: 1199677-1200477 bp Ori: BBB65364.1 Feature: domain Description: nitrilase Location: 1199785-1200382 bp Feature: domain Description: nitrilase Location: 1 1 99785-1 200382 bp Feature: gene Location: 1200567-1202915 bp Ori: BBB65365.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1201092-1201611 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 201 092-1 201 61 1 bp Feature: gene Location: 1203669-1204628 bp Ori: BBB65366.1 Gene: miaA Feature: domain Description: miaA Location: 1203699-1204611 bp Feature: domain Description: miaA Location: 1 203699-1 20461 1 bp Feature: gene Location: 1204625-1205890 bp Ori: BBB65367.1 Feature: domain Description: MFS_MdfA_MDR_like Location: 1204724-1205852 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 1 204724-1 205852 bp Feature: gene Location: 1815002-1815298 bp Feature: gene Location: 1815295-1815870 bp Feature: gene Location: 1815867-1816967 bp Ori: BBB65872.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1816050-1816737 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 81 6050-1 81 6737 bp Feature: gene Location: 1816964-1817728 bp Feature: gene Location: 1817725-1818078 bp Feature: gene Location: 4040366-4042348 bp Ori: BBB67889.1 Feature: domain Description: BDS1 Location: 4040450-4042343 bp Feature: domain Description: BDS1 Location: 4040450-4042343 bp Feature: gene Location: 4042539-4042757 bp Ori: BBB67890.1 Gene: cspB Feature: domain Description: CSP_CDS Location: 4042563-4042746 bp Feature: domain Description: CSP_CDS Location: 4042563-4042746 bp Feature: gene Location: 4042750-4043922 bp Ori: BBB67891.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4042900-4043464 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4042900-4043464 bp Feature: gene Location: 4044867-4046564 bp Ori: BBB67892.1 Feature: domain Description: OM_YfiO Location: 4046187-4046529 bp Feature: domain Description: OM_YfiO Location: 40461 87-4046529 bp Feature: gene Location: 4047498-4047632 bp Feature: gene Location: 5632229-5633944 bp Ori: BBB69419.1 Gene: phoD Feature: domain Description: PhoD Location: 5632277-5633918 bp Feature: domain Description: PhoD Location: 5632277-563391 8 bp Feature: gene Location: 5634091-5634747 bp Ori: BBB69420.1 Feature: domain Description: GstA Location: 5634154-5634733 bp Feature: domain Description: GstA Location: 56341 54-5634733 bp Feature: gene Location: 5634949-5636346 bp Ori: BBB69421.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5635462-5636098 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5635462-5636098 bp Feature: gene Location: 5636354-5636725 bp Ori: BBB69422.1 Feature: domain Description: YgdD Location: 5636366-5636720 bp Feature: domain Description: YgdD Location: 5636366-5636720 bp Feature: gene Location: 5636863-5637321 bp Ori: BBB69423.1 Feature: domain Description: MarR Location: 5636959-5637280 bp Feature: domain Description: MarR Location: 5636959-5637280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gyrB (TIGR01059), PIN_VapC_N-like (cd18697), RVT-Retrons, Trypsin_2 (pfam13365), LpqC (COG3509), PRK12553 (ATP-dependent Clp protease proteolytic subunit; Reviewed), HEAT_2 (pfam13646), COG4700 (Uncharacterized protein ), Cache_2 (smart01049), nitrilase (cl11424)
RVT-UG5, miaA (TIGR00174), MFS_MdfA_MDR_like (cd17320), RVT-DGRs, BDS1 (COG2015), CSP_CDS (cd04458), OM_YfiO (TIGR03302), PhoD (pfam09423), GstA (COG0625), YgdD (COG2363)
MarR (pfam01047)