myRT

myRT report for GCA_010092405.1_ASM1009240v1

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Seq: CP048026.1 Escherichia coli strain GZEC065 plasmid pTEM1-GZEC065, complete sequence (142236 bp)
Overview 1 RT 1: 7767-11362 bp Neighborhood of RT #1 [7767, 11362] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 7767-8506 bp Feature: domain Description: InsE Location: 7770-8109 bp Feature: domain Description: InsE Location: 7770-81 09 bp Feature: gene Location: 8499-8870 bp Feature: gene Location: 9164-10687 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9437-10169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9437-1 01 69 bp Feature: domain Description: GIIM Note: maturase Location: 10244-10442 bp Feature: domain Description: GIIM Note: maturase Location: 1 0244-1 0442 bp Feature: gene Location: 10777-11250 bp Feature: domain Description: PHA02517 Location: 10783-11248 bp Feature: domain Description: PHA0251 7 Location: 1 0783-1 1 248 bp Feature: gene Location: 11216-11362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CP048025.1 Escherichia coli strain GZEC065 chromosome, complete genome (4830815 bp)
Overview 1 RT 1: 2336194-2341944 bp 2 RT 2: 4155734-4166656 bp Neighborhood of RT #1 [2336194, 2342344] HsdM PHA02517 RVT-GII GIIM InsE Neighborhood of RT #2 [4155734, 4166673] Resolvase RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 2336194-2338617 bp Ori: QHS06122.1 Feature: domain Description: HsdM Location: 2336215-2338159 bp Feature: domain Description: HsdM Location: 2 3362 15-2 338159 bp Feature: gene Location: 2338876-2339343 bp Feature: domain Description: PHA02517 Location: 2338879-2339338 bp Feature: domain Description: PHA02 517 Location: 2 338879-2 339338 bp Feature: gene Location: 2339424-2340947 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2339697-2340429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 339697-2 34042 9 bp Feature: domain Description: GIIM Note: maturase Location: 2340504-2340702 bp Feature: domain Description: GIIM Note: maturase Location: 2 340504-2 340702 bp Feature: gene Location: 2341241-2341612 bp Feature: gene Location: 2341605-2342344 bp Feature: domain Description: InsE Location: 2341608-2341944 bp Feature: domain Description: InsE Location: 2 341608-2 341944 bp Feature: gene Location: 4155734-4156078 bp Feature: gene Location: 4156361-4157026 bp Ori: QHS07667.1 Feature: domain Description: Resolvase Location: 4156382-4156799 bp Feature: domain Description: Resolvase Location: 4156382 -4156799 bp Feature: gene Location: 4157294-4159000 bp Ori: QHS08401.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4157444-4158041 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4157444-4158041 bp Feature: gene Location: 4159137-4159634 bp Feature: gene Location: 4159874-4160335 bp Ori: QHS07669.1 Feature: domain Description: HTH_XRE Location: 4159904-4160072 bp Feature: domain Description: HTH_XRE Location: 4159904-4160072 bp Feature: gene Location: 4160366-4161547 bp Ori: QHS07670.1 Feature: domain Description: DUF4062 Location: 4160381-4160708 bp Feature: domain Description: DUF4062 Location: 4160381-4160708 bp Feature: gene Location: 4162256-4163440 bp Ori: QHS07671.1 Feature: domain Description: PRK09692 Location: 4162262-4163417 bp Feature: domain Description: PRK09692 Location: 4162 2 62 -4163417 bp Feature: gene Location: 4163433-4165061 bp Ori: QHS07672.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4163841-4164270 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4163841-41642 70 bp Feature: gene Location: 4165058-4165798 bp Feature: gene Location: 4166101-4166673 bp Ori: QHS07674.1 Feature: domain Description: Psu Location: 4166119-4166656 bp Feature: domain Description: Psu Location: 4166119-4166656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Resolvase (smart00857), RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional)
RVT-UG7, Psu (pfam07455)