myRT

myRT report for GCA_010092445.1_ASM1009244v1

Download annotations/find similar RTs

Seq: CP048031.1 Shewanella sp. Arc9-LZ chromosome, complete genome (4911031 bp)
Overview 1 RT 1: 1133700-1138000 bp 2 RT 2: 2237741-2244783 bp 3 RT 3: 2367033-2374905 bp 4 RT 4: 4375960-4384867 bp Neighborhood of RT #1 [1133700, 1138000] InsE RVT_N RVT-GII GIIM Neighborhood of RT #2 [2237741, 2244783] COG4994 RVT_N RVT-GII GIIM PRK00029 Neighborhood of RT #3 [2367033, 2375390] InsE RVT_N RVT-GII GIIM PRK09776 GAF_2 PRK10060 TIR_2 Neighborhood of RT #4 [4375960, 4384875] HipA couple_hipB RVT-Retrons DUF4382 COG4233 DsbD Feature: gene Location: 1133700-1133946 bp Ori: QHS12502.1 Feature: domain Description: InsE Location: 1133709-1133934 bp Feature: domain Description: InsE Location: 1 1 33709-1 1 33934 bp Feature: gene Location: 1132805-1133700 bp Feature: gene Location: 1134639-1136111 bp Ori: QHS15470.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1134687-1134930 bp Feature: domain Description: RVT_N Location: 1 1 34687-1 1 34930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1134975-1135602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 34975-1 1 35602 bp Feature: domain Description: GIIM Note: maturase Location: 1135662-1135887 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 35662-1 1 35887 bp Feature: gene Location: 1137154-1137603 bp Feature: gene Location: 1137689-1138000 bp Feature: gene Location: 2237741-2238331 bp Feature: gene Location: 2238552-2238923 bp Ori: QHS13372.1 Feature: domain Description: COG4994 Location: 2238558-2238906 bp Feature: domain Description: COG4994 Location: 2238558-2238906 bp Feature: gene Location: 2239880-2241352 bp Ori: QHS15526.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2239928-2240171 bp Feature: domain Description: RVT_N Location: 2239928-22401 71 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2240216-2240843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224021 6-2240843 bp Feature: domain Description: GIIM Note: maturase Location: 2240903-2241128 bp Feature: domain Description: GIIM Note: maturase Location: 2240903-2241 1 28 bp Feature: gene Location: 2242111-2243871 bp Ori: QHS13373.1 Feature: domain Description: PRK00029 Location: 2242261-2243791 bp Feature: domain Description: PRK00029 Location: 2242261 -2243791 bp Feature: gene Location: 2244133-2244783 bp Feature: gene Location: 2367033-2367291 bp Ori: QHS13466.1 Feature: domain Description: InsE Location: 2367057-2367288 bp Feature: domain Description: InsE Location: 2367057-2367288 bp Feature: gene Location: 2366132-2367033 bp Feature: gene Location: 2368165-2369637 bp Ori: QHS15531.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2368213-2368456 bp Feature: domain Description: RVT_N Location: 236821 3-2368456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2368501-2369128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2368501 -23691 28 bp Feature: domain Description: GIIM Note: maturase Location: 2369188-2369413 bp Feature: domain Description: GIIM Note: maturase Location: 23691 88-236941 3 bp Feature: gene Location: 2370704-2373784 bp Ori: QHS13467.1 Feature: domain Description: PRK09776 Location: 2370836-2371496 bp Feature: domain Description: PRK09776 Location: 2370836-2371 496 bp Feature: domain Description: GAF_2 Location: 2371703-2372099 bp Feature: domain Description: GAF_2 Location: 2371 703-2372099 bp Feature: domain Description: PRK10060 Location: 2372138-2373758 bp Feature: domain Description: PRK1 0060 Location: 23721 38-2373758 bp Feature: gene Location: 2374542-2375390 bp Ori: QHS13468.1 Feature: domain Description: TIR_2 Location: 2374551-2374905 bp Feature: domain Description: TIR_2 Location: 2374551 -2374905 bp Feature: gene Location: 4375960-4377333 bp Ori: QHS15023.1 Feature: domain Description: HipA Location: 4376131-4377277 bp Feature: domain Description: HipA Location: 43761 31 -4377277 bp Feature: gene Location: 4377869-4378105 bp Ori: QHS15024.1 Feature: domain Description: couple_hipB Location: 4377896-4378058 bp Feature: domain Description: couple_hipB Location: 4377896-4378058 bp Feature: gene Location: 4378534-4380384 bp Ori: QHS15025.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4378669-4379389 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4378669-4379389 bp Feature: gene Location: 4381050-4382045 bp Ori: QHS15026.1 Feature: domain Description: DUF4382 Location: 4381155-4381563 bp Feature: domain Description: DUF4382 Location: 4381 1 55-4381 563 bp Feature: gene Location: 4382791-4384875 bp Ori: QHS15027.1 Feature: domain Description: COG4233 Location: 4382803-4383421 bp Feature: domain Description: COG4233 Location: 4382803-4383421 bp Feature: domain Description: DsbD Location: 4383637-4384867 bp Feature: domain Description: DsbD Location: 4383637-4384867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4994 (Uncharacterized protein ), PRK00029 (YdiU family protein), PRK09776 (putative diguanylate cyclase; Provisional), GAF_2 (pfam13185), PRK10060 (cyclic di-GMP phosphodiesterase), TIR_2 (pfam13676)
HipA (COG3550), couple_hipB (TIGR03070), RVT-Retrons, DUF4382 (pfam14321), COG4233 (Thiol-disulfide interchange protein, contains DsbC and DsbD domains ), DsbD (pfam02683)