myRT

myRT report for GCA_010092585.1_ASM1009258v1

Download annotations/find similar RTs

Seq: CP048067.1 Piscirickettsia salmonis strain Ps-8079A plasmid Ps8079A-p1, complete sequence (200877 bp)
Overview 1 RT 1: 10454-14197 bp 2 RT 2: 59544-62486 bp 3 RT 3: 68873-71623 bp 4 RT 4: 106030-108669 bp 5 RT 5: 189844-193436 bp Neighborhood of RT #1 [10454, 14427] InsE RVT-GII Y2_Tnp Neighborhood of RT #2 [59544, 62486] Zn_Tnp_IS91 group_II_RT_mat RVT-GII InsE Neighborhood of RT #3 [68873, 71637] Zn_Tnp_IS91 RVT-GII InsE PHA02517 Neighborhood of RT #4 [106030, 108899] InsE RVT-GII Y2_Tnp Neighborhood of RT #5 [189844, 193471] InsE RVT-GII RVT-UNC Y2_Tnp Feature: gene Location: 10454-10724 bp Ori: QHS34155.1 Feature: domain Description: InsE Location: 10460-10724 bp Feature: domain Description: InsE Location: 1 0460-1 0724 bp Feature: gene Location: 9571-10454 bp Feature: gene Location: 10745-11452 bp Ori: QHS34156.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11027-11417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 027-1 1 41 7 bp Feature: gene Location: 11836-13252 bp Feature: gene Location: 13612-14427 bp Ori: QHS34157.1 Feature: domain Description: Y2_Tnp Location: 13699-14197 bp Feature: domain Description: Y2_Tnp Location: 1 3699-1 41 97 bp Feature: gene Location: 59544-59942 bp Ori: QHS34217.1 Feature: domain Description: Zn_Tnp_IS91 Location: 59556-59787 bp Feature: domain Description: Zn_Tnp_IS91 Location: 59556-59787 bp Feature: gene Location: 59998-60495 bp Ori: QHS34218.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 60004-60355 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 60004-60355 bp Feature: gene Location: 60492-61271 bp Ori: QHS34219.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60681-61269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60681 -61 269 bp Feature: gene Location: 61300-61603 bp Ori: QHS34359.1 Feature: domain Description: InsE Location: 61345-61603 bp Feature: domain Description: InsE Location: 61 345-61 603 bp Feature: gene Location: 61603-62486 bp Feature: gene Location: 68873-69034 bp Feature: gene Location: 69034-69534 bp Ori: QHS34227.1 Feature: domain Description: Zn_Tnp_IS91 Location: 69106-69379 bp Feature: domain Description: Zn_Tnp_IS91 Location: 691 06-69379 bp Feature: gene Location: 69796-70386 bp Ori: QHS34228.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69799-70207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69799-70207 bp Feature: gene Location: 70449-70742 bp Ori: QHS34229.1 Feature: domain Description: InsE Location: 70455-70734 bp Feature: domain Description: InsE Location: 70455-70734 bp Feature: gene Location: 70825-71637 bp Ori: QHS34230.1 Feature: domain Description: PHA02517 Location: 70840-71623 bp Feature: domain Description: PHA0251 7 Location: 70840-71 623 bp Feature: gene Location: 106030-106300 bp Ori: QHS34265.1 Feature: domain Description: InsE Location: 106036-106300 bp Feature: domain Description: InsE Location: 1 06036-1 06300 bp Feature: gene Location: 105147-106030 bp Feature: gene Location: 106260-107387 bp Ori: QHS34266.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106542-107220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06542-1 07220 bp Feature: gene Location: 107608-107754 bp Feature: gene Location: 108084-108899 bp Ori: QHS34268.1 Feature: domain Description: Y2_Tnp Location: 108171-108669 bp Feature: domain Description: Y2_Tnp Location: 1 081 71 -1 08669 bp Feature: gene Location: 189844-190114 bp Ori: QHS34341.1 Feature: domain Description: InsE Location: 189850-190114 bp Feature: domain Description: InsE Location: 1 89850-1 901 1 4 bp Feature: gene Location: 188961-189844 bp Feature: gene Location: 190135-190599 bp Ori: QHS34342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190174-190564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 901 74-1 90564 bp Feature: gene Location: 191273-192632 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 192053-192275 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 92053-1 92275 bp Feature: gene Location: 192988-193227 bp Feature: gene Location: 193295-193471 bp Ori: QHS34368.1 Feature: domain Description: Y2_Tnp Location: 193307-193436 bp Feature: domain Description: Y2_Tnp Location: 1 93307-1 93436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, Y2_Tnp (pfam04986), Zn_Tnp_IS91 (pfam14319), group_II_RT_mat (TIGR04416), PHA02517 (putative transposase OrfB; Reviewed), RVT-CRISPR/RVT-GII/RVT-UG25/RVT-UG2(RVT-UNC)

Seq: CP048066.1 Piscirickettsia salmonis strain Ps-8079A chromosome, complete genome (3175218 bp)
Overview 1 RT 1: 21168-24654 bp 2 RT 2: 54235-57721 bp 3 RT 3: 704817-708277 bp 4 RT 4: 839590-848967 bp 5 RT 5: 944916-949405 bp 6 RT 6: 1473135-1480554 bp 7 RT 7: 1635416-1641547 bp 8 RT 8: 1861609-1863736 bp Neighborhood of RT #1 [21168, 24659] RVT-GII Zn_Tnp_IS91 COG2958 Neighborhood of RT #2 [54235, 57726] RVT-GII Zn_Tnp_IS91 COG2958 Neighborhood of RT #3 [704817, 708277] MDR_like_2 RVT-GII Zn_Tnp_IS91 Neighborhood of RT #4 [839590, 849005] MFS_DtpA_like Y2_Tnp RVT-GII HTH_23 InsE DDE_3 RVT-GII Zn_Tnp_IS91 beta_CA_cladeB Neighborhood of RT #5 [944916, 949405] Y2_Tnp RVT-GII Zn_Tnp_IS91 Neighborhood of RT #6 [1473135, 1480613] Rve RVT-GII Y2_Tnp AcrB Neighborhood of RT #7 [1635416, 1641558] InsE RVT-GII DDE_3 HTH_Tnp_IS630 RVT-GII Y2_Tnp HTH_Tnp_IS630 Neighborhood of RT #8 [1861609, 1863813] Zn_Tnp_IS91 RVT-GII HTH_Tnp_IS630 DDE_3 Feature: gene Location: 21168-21419 bp Feature: gene Location: 21828-22010 bp Feature: gene Location: 22215-23438 bp Ori: QHS31175.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22398-23079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 398-2 3079 bp Feature: gene Location: 23650-24045 bp Ori: QHS31176.1 Feature: domain Description: Zn_Tnp_IS91 Location: 23737-23929 bp Feature: domain Description: Zn_Tnp_IS91 Location: 2 3737-2 392 9 bp Feature: gene Location: 24222-24659 bp Feature: domain Description: COG2958 Location: 24228-24654 bp Feature: domain Description: COG2 958 Location: 2 42 2 8-2 4654 bp Feature: gene Location: 54235-54486 bp Feature: gene Location: 54895-55077 bp Feature: gene Location: 55282-56505 bp Ori: QHS31197.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55465-56146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55465-56146 bp Feature: gene Location: 56717-57112 bp Ori: QHS31198.1 Feature: domain Description: Zn_Tnp_IS91 Location: 56804-56996 bp Feature: domain Description: Zn_Tnp_IS91 Location: 56804-56996 bp Feature: gene Location: 57289-57726 bp Feature: domain Description: COG2958 Location: 57295-57721 bp Feature: domain Description: COG2 958 Location: 572 95-5772 1 bp Feature: gene Location: 704817-705779 bp Ori: QHS31765.1 Feature: domain Description: MDR_like_2 Location: 704820-705759 bp Feature: domain Description: MDR_like_2 Location: 70482 0-705759 bp Feature: gene Location: 705899-706153 bp Feature: gene Location: 706655-707506 bp Ori: QHS31767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706706-707099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 706706-707099 bp Feature: gene Location: 707562-707963 bp Ori: QHS31768.1 Feature: domain Description: Zn_Tnp_IS91 Location: 707574-707808 bp Feature: domain Description: Zn_Tnp_IS91 Location: 707574-707808 bp Feature: gene Location: 708122-708277 bp Feature: gene Location: 839590-840033 bp Feature: domain Description: MFS_DtpA_like Location: 839614-840034 bp Feature: domain Description: MFS_DtpA_like Location: 839614-840034 bp Feature: gene Location: 840259-841074 bp Ori: QHS31878.1 Feature: domain Description: Y2_Tnp Location: 840346-840844 bp Feature: domain Description: Y2 _Tnp Location: 840346-840844 bp Feature: gene Location: 841483-842805 bp Ori: QHS31879.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841765-842446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841765-842 446 bp Feature: gene Location: 843090-843434 bp Ori: QHS31880.1 Feature: domain Description: HTH_23 Location: 843108-843219 bp Feature: domain Description: HTH_2 3 Location: 843108-8432 19 bp Feature: gene Location: 844326-844596 bp Ori: QHS31881.1 Feature: domain Description: InsE Location: 844332-844596 bp Feature: domain Description: InsE Location: 844332 -844596 bp Feature: gene Location: 844655-845224 bp Feature: domain Description: DDE_3 Location: 844754-845147 bp Feature: domain Description: DDE_3 Location: 844754-845147 bp Feature: gene Location: 845609-845911 bp Feature: gene Location: 846116-847219 bp Ori: QHS31883.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846179-846857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846179-846857 bp Feature: gene Location: 847321-847821 bp Ori: QHS31884.1 Feature: domain Description: Zn_Tnp_IS91 Location: 847393-847666 bp Feature: domain Description: Zn_Tnp_IS91 Location: 847393-847666 bp Feature: gene Location: 848343-849005 bp Ori: QHS31885.1 Feature: domain Description: beta_CA_cladeB Location: 848391-848967 bp Feature: domain Description: beta_CA_cladeB Location: 848391-848967 bp Feature: gene Location: 944916-945452 bp Feature: gene Location: 945614-946429 bp Ori: QHS31967.1 Feature: domain Description: Y2_Tnp Location: 945701-946202 bp Feature: domain Description: Y2 _Tnp Location: 945701-9462 02 bp Feature: gene Location: 946838-948205 bp Ori: QHS31968.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947120-947801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94712 0-947801 bp Feature: gene Location: 948261-948659 bp Ori: QHS31969.1 Feature: domain Description: Zn_Tnp_IS91 Location: 948273-948504 bp Feature: domain Description: Zn_Tnp_IS91 Location: 9482 73-948504 bp Feature: gene Location: 948848-949405 bp Feature: gene Location: 1473135-1473779 bp Ori: QHS32384.1 Feature: domain Description: Rve Location: 1473177-1473756 bp Feature: domain Description: Rve Location: 1473177-1473756 bp Feature: gene Location: 1474026-1474151 bp Feature: gene Location: 1474688-1476010 bp Ori: QHS32385.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474970-1475651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474970-1475651 bp Feature: gene Location: 1476419-1477234 bp Ori: QHS32386.1 Feature: domain Description: Y2_Tnp Location: 1476506-1477007 bp Feature: domain Description: Y2 _Tnp Location: 1476506-1477007 bp Feature: gene Location: 1477533-1480613 bp Ori: QHS32387.1 Feature: domain Description: AcrB Location: 1477542-1480554 bp Feature: domain Description: AcrB Location: 1477542 -1480554 bp Feature: gene Location: 1635416-1635686 bp Ori: QHS32514.1 Feature: domain Description: InsE Location: 1635422-1635686 bp Feature: domain Description: InsE Location: 163542 2 -1635686 bp Feature: gene Location: 1635686-1636569 bp Feature: gene Location: 1636578-1637171 bp Ori: QHS34016.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1636764-1637157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1636764-1637157 bp Feature: gene Location: 1637461-1637634 bp Feature: gene Location: 1637694-1638269 bp Ori: QHS34017.1 Feature: domain Description: DDE_3 Location: 1637799-1638192 bp Feature: domain Description: DDE_3 Location: 1637799-1638192 bp Feature: gene Location: 1638215-1638580 bp Ori: QHS32516.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1638230-1638569 bp Feature: domain Description: HTH_Tnp_IS630 Location: 16382 30-1638569 bp Feature: gene Location: 1639111-1640433 bp Ori: QHS32517.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639393-1640074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1639393-1640074 bp Feature: gene Location: 1640842-1641171 bp Ori: QHS32518.1 Feature: domain Description: Y2_Tnp Location: 1640929-1641076 bp Feature: domain Description: Y2 _Tnp Location: 164092 9-1641076 bp Feature: gene Location: 1641193-1641558 bp Ori: QHS32519.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1641208-1641547 bp Feature: domain Description: HTH_Tnp_IS630 Location: 16412 08-1641547 bp Feature: gene Location: 1861609-1861695 bp Feature: gene Location: 1861751-1862149 bp Ori: QHS32707.1 Feature: domain Description: Zn_Tnp_IS91 Location: 1861763-1861994 bp Feature: domain Description: Zn_Tnp_IS91 Location: 1861763-1861994 bp Feature: gene Location: 1862234-1862842 bp Ori: QHS32708.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1862252-1862465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1862 2 52 -1862 465 bp Feature: gene Location: 1862927-1863292 bp Ori: QHS32709.1 Feature: domain Description: HTH_Tnp_IS630 Location: 1862942-1863281 bp Feature: domain Description: HTH_Tnp_IS630 Location: 1862 942 -18632 81 bp Feature: gene Location: 1863238-1863813 bp Ori: QHS34032.1 Feature: domain Description: DDE_3 Location: 1863343-1863736 bp Feature: domain Description: DDE_3 Location: 1863343-1863736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Zn_Tnp_IS91 (pfam14319), COG2958 (Uncharacterized protein ), MDR_like_2 (cd05289), MFS_DtpA_like (cd17346), Y2_Tnp (pfam04986), HTH_23 (pfam13384), InsE (COG2963), DDE_3 (pfam13358), beta_CA_cladeB (cd00884)
Rve (COG3316), AcrB (COG0841), HTH_Tnp_IS630 (pfam01710)