myRT

myRT report for GCA_010092965.1_ASM1009296v1

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Seq: CP048107.1 Escherichia coli strain 201609 chromosome, complete genome (5195374 bp)
Overview 1 RT 1: 147536-151418 bp 2 RT 2: 785823-790320 bp 3 RT 3: 1693146-1697378 bp Neighborhood of RT #1 [147536, 151423] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [785823, 790328] IS285 InsE RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [1693146, 1697395] COG4930 PHA02517 RVT-GII IS285 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 147536-148252 bp Ori: QHS39599.1 Gene: rph Feature: domain Description: rph Location: 147539-148247 bp Feature: domain Description: rph Location: 1 47539-1 48247 bp Feature: gene Location: 148318-148959 bp Ori: QHS39600.1 Gene: pyrE Feature: domain Description: pyrE Location: 148321-148954 bp Feature: domain Description: pyrE Location: 1 48321 -1 48954 bp Feature: gene Location: 149257-150216 bp Ori: QHS39601.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 149392-149941 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 49392-1 49941 bp Feature: gene Location: 150262-150858 bp Ori: QHS39602.1 Gene: slmA Feature: domain Description: slmA Location: 150268-150844 bp Feature: domain Description: slmA Location: 1 50268-1 50844 bp Feature: gene Location: 150965-151423 bp Ori: QHS39603.1 Gene: dut Feature: domain Description: dut Location: 150971-151418 bp Feature: domain Description: dut Location: 1 50971 -1 51 41 8 bp Feature: gene Location: 785823-786614 bp Feature: domain Description: IS285 Location: 785826-786603 bp Feature: domain Description: IS285 Location: 785826-786603 bp Feature: gene Location: 786670-787409 bp Feature: domain Description: InsE Location: 786673-787009 bp Feature: domain Description: InsE Location: 786673-787009 bp Feature: gene Location: 788082-789590 bp Ori: QHS43941.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788340-789072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788340-789072 bp Feature: domain Description: GIIM Note: maturase Location: 789147-789345 bp Feature: domain Description: GIIM Note: maturase Location: 7891 47-789345 bp Feature: gene Location: 789662-790084 bp Feature: domain Description: PHA02517 Location: 789665-790073 bp Feature: domain Description: PHA0251 7 Location: 789665-790073 bp Feature: gene Location: 790134-790328 bp Feature: domain Description: InsE Location: 790149-790320 bp Feature: domain Description: InsE Location: 7901 49-790320 bp Feature: gene Location: 1693146-1693475 bp Feature: domain Description: COG4930 Location: 1693149-1693473 bp Feature: domain Description: COG4930 Location: 1 6931 49-1 693473 bp Feature: gene Location: 1693479-1694030 bp Feature: domain Description: PHA02517 Location: 1693485-1694019 bp Feature: domain Description: PHA0251 7 Location: 1 693485-1 69401 9 bp Feature: gene Location: 1694179-1694641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694191-1694386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6941 91 -1 694386 bp Feature: gene Location: 1694784-1695423 bp Feature: domain Description: IS285 Location: 1694814-1695192 bp Feature: domain Description: IS285 Location: 1 69481 4-1 6951 92 bp Feature: gene Location: 1695719-1697395 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1695965-1696175 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 695965-1 6961 75 bp Feature: domain Description: zf-IS66 Location: 1696205-1696331 bp Feature: domain Description: zf-IS66 Location: 1 696205-1 696331 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1696373-1697246 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 696373-1 697246 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1697267-1697378 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 697267-1 697378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), IS285 (COG3328), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)
COG4930 (Predicted ATP-dependent Lon-type protease ), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)