myRT

myRT report for GCA_010093065.1_ASM1009306v1

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Seq: CP048113.1 Chitinophaga sp. H33E-04 chromosome, complete genome (7969925 bp)
Overview 1 RT 1: 476242-481825 bp 2 RT 2: 1005842-1014586 bp 3 RT 3: 1668990-1673257 bp 4 RT 4: 1707030-1711635 bp 5 RT 5: 2507447-2512190 bp 6 RT 6: 2601465-2606477 bp 7 RT 7: 4058407-4062513 bp 8 RT 8: 6944694-6949367 bp 9 RT 9: 6958234-6972573 bp Neighborhood of RT #1 [476242, 481848] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [1005842, 1014597] WGR_DNA_ligase HEAT_2 RVT-Retrons CypX Neighborhood of RT #3 [1668990, 1673295] DUF1963 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #4 [1707030, 1711667] HxlR OPHC2-like_MBL-fold RVT-GII COG3666 carb_red_PTCR-like_SDR_c Neighborhood of RT #5 [2507447, 2512190] RVT-G2Lc Neighborhood of RT #6 [2601465, 2606515] HTH_Tnp_Tc3_1 COG4584 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #7 [4058407, 4062551] YhcM DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #8 [6944694, 6949367] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #9 [6958234, 6972728] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C VirE_N RVT-UG28b AmyAc_MTSase trehalose_TreZ Feature: gene Location: 476242-476547 bp Ori: QHS58380.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 476257-476509 bp Feature: domain Description: TnpB_IS66 Location: 476257-476509 bp Feature: gene Location: 476597-477331 bp Ori: QHS58381.1 Feature: domain Description: LZ_Tnp_IS66 Location: 476666-476900 bp Feature: domain Description: LZ_Tnp_IS66 Location: 476666-476900 bp Feature: domain Description: zf-IS66 Location: 476936-477017 bp Feature: domain Description: zf-IS66 Location: 476936-47701 7 bp Feature: domain Description: DDE_Tnp_IS66 Location: 477089-477314 bp Feature: domain Description: DDE_Tnp_IS66 Location: 477089-47731 4 bp Feature: gene Location: 477832-479061 bp Ori: QHS58382.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478045-478699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478045-478699 bp Feature: domain Description: GIIM Note: maturase Location: 478777-478978 bp Feature: domain Description: GIIM Note: maturase Location: 478777-478978 bp Feature: gene Location: 479163-479930 bp Ori: QHS58383.1 Feature: domain Description: DDE_Tnp_IS66 Location: 479169-479775 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4791 69-479775 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 479796-479907 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 479796-479907 bp Feature: gene Location: 480358-481848 bp Ori: QHS58384.1 Feature: domain Description: LZ_Tnp_IS66 Location: 480427-480661 bp Feature: domain Description: LZ_Tnp_IS66 Location: 480427-480661 bp Feature: domain Description: zf-IS66 Location: 480697-480778 bp Feature: domain Description: zf-IS66 Location: 480697-480778 bp Feature: domain Description: DDE_Tnp_IS66 Location: 480850-481693 bp Feature: domain Description: DDE_Tnp_IS66 Location: 480850-481 693 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 481714-481825 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 481 71 4-481 825 bp Feature: gene Location: 1005842-1009060 bp Ori: QHS58751.1 Feature: domain Description: WGR_DNA_ligase Location: 1005857-1006082 bp Feature: domain Description: WGR_DNA_ligase Location: 1 005857-1 006082 bp Feature: domain Description: HEAT_2 Location: 1006220-1006427 bp Feature: domain Description: HEAT_2 Location: 1 006220-1 006427 bp Feature: gene Location: 1009071-1010729 bp Feature: gene Location: 1011175-1012680 bp Ori: QHS58753.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1011718-1012336 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 01 1 71 8-1 01 2336 bp Feature: gene Location: 1012853-1013212 bp Feature: gene Location: 1013434-1014597 bp Ori: QHS58755.1 Feature: domain Description: CypX Location: 1013461-1014586 bp Feature: domain Description: CypX Location: 1 01 3461 -1 01 4586 bp Feature: gene Location: 1668990-1669283 bp Ori: QHS59196.1 Feature: domain Description: DUF1963 Location: 1669008-1669221 bp Feature: domain Description: DUF1 963 Location: 1 669008-1 669221 bp Feature: gene Location: 1669607-1670374 bp Ori: QHS59197.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1669613-1670219 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 66961 3-1 67021 9 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1670240-1670351 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 670240-1 670351 bp Feature: gene Location: 1670476-1671705 bp Ori: QHS59198.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1670689-1671343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 670689-1 671 343 bp Feature: domain Description: GIIM Note: maturase Location: 1671421-1671631 bp Feature: domain Description: GIIM Note: maturase Location: 1 671 421 -1 671 631 bp Feature: gene Location: 1672206-1672940 bp Ori: QHS59199.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1672275-1672509 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 672275-1 672509 bp Feature: domain Description: zf-IS66 Location: 1672545-1672626 bp Feature: domain Description: zf-IS66 Location: 1 672545-1 672626 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1672698-1672923 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 672698-1 672923 bp Feature: gene Location: 1672990-1673295 bp Ori: QHS59200.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 1673005-1673257 bp Feature: domain Description: TnpB_IS66 Location: 1 673005-1 673257 bp Feature: gene Location: 1707030-1707470 bp Ori: QHS59221.1 Feature: domain Description: HxlR Location: 1707120-1707426 bp Feature: domain Description: HxlR Location: 1 7071 20-1 707426 bp Feature: gene Location: 1707560-1708420 bp Ori: QHS59222.1 Feature: domain Description: OPHC2-like_MBL-fold Location: 1707611-1708346 bp Feature: domain Description: OPHC2-like_MBL-fold Location: 1 70761 1 -1 708346 bp Feature: gene Location: 1709805-1710365 bp Ori: QHS59223.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1709808-1709997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 709808-1 709997 bp Feature: gene Location: 1710380-1710811 bp Ori: QHS59224.1 Feature: domain Description: COG3666 Location: 1710413-1710767 bp Feature: domain Description: COG3666 Location: 1 71 041 3-1 71 0767 bp Feature: gene Location: 1711059-1711667 bp Ori: QHS59225.1 Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 1711068-1711635 bp Feature: domain Description: carb_red_PTCR-like_SDR_c Location: 1 71 1 068-1 71 1 635 bp Feature: gene Location: 2507447-2507755 bp Feature: gene Location: 2507703-2508362 bp Feature: gene Location: 2509121-2510434 bp Ori: QHS59845.1 Feature: RT Description: RVT-G2Lc Note: G2Lc RT Location: 2509325-2509991 bp Feature: RT Description: RVT-G2Lc Note: G2Lc RT Location: 2509325-2509991 bp Feature: gene Location: 2510542-2510967 bp Feature: gene Location: 2510964-2512190 bp Feature: gene Location: 2601465-2602811 bp Ori: QHS59916.1 Feature: domain Description: HTH_Tnp_Tc3_1 Location: 2601504-2601591 bp Feature: domain Description: HTH_Tnp_Tc3_1 Location: 2601 504-2601 591 bp Feature: domain Description: COG4584 Location: 2601744-2602359 bp Feature: domain Description: COG4584 Location: 2601 744-2602359 bp Feature: gene Location: 2602827-2603594 bp Ori: QHS59917.1 Feature: domain Description: DDE_Tnp_IS66 Location: 2602833-2603439 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2602833-2603439 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2603460-2603571 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2603460-2603571 bp Feature: gene Location: 2603696-2604925 bp Ori: QHS59918.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2603909-2604563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2603909-2604563 bp Feature: domain Description: GIIM Note: maturase Location: 2604641-2604851 bp Feature: domain Description: GIIM Note: maturase Location: 2604641 -2604851 bp Feature: gene Location: 2605426-2606160 bp Ori: QHS59919.1 Feature: domain Description: LZ_Tnp_IS66 Location: 2605495-2605729 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2605495-2605729 bp Feature: domain Description: zf-IS66 Location: 2605765-2605846 bp Feature: domain Description: zf-IS66 Location: 2605765-2605846 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2605918-2606143 bp Feature: domain Description: DDE_Tnp_IS66 Location: 260591 8-26061 43 bp Feature: gene Location: 2606210-2606515 bp Ori: QHS59920.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 2606225-2606477 bp Feature: domain Description: TnpB_IS66 Location: 2606225-2606477 bp Feature: gene Location: 4058407-4058832 bp Ori: QHS61057.1 Feature: domain Description: YhcM Location: 4058554-4058644 bp Feature: domain Description: YhcM Location: 4058554-4058644 bp Feature: gene Location: 4058863-4059630 bp Ori: QHS61058.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4058869-4059475 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4058869-4059475 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4059496-4059607 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4059496-4059607 bp Feature: gene Location: 4059732-4060961 bp Ori: QHS61059.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4059945-4060599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4059945-4060599 bp Feature: domain Description: GIIM Note: maturase Location: 4060677-4060878 bp Feature: domain Description: GIIM Note: maturase Location: 4060677-4060878 bp Feature: gene Location: 4061462-4062196 bp Ori: QHS61060.1 Feature: domain Description: LZ_Tnp_IS66 Location: 4061531-4061765 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4061 531 -4061 765 bp Feature: domain Description: zf-IS66 Location: 4061801-4061882 bp Feature: domain Description: zf-IS66 Location: 4061 801 -4061 882 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4061954-4062179 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4061 954-40621 79 bp Feature: gene Location: 4062246-4062551 bp Ori: QHS61061.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 4062261-4062513 bp Feature: domain Description: TnpB_IS66 Location: 4062261 -406251 3 bp Feature: gene Location: 6944694-6944999 bp Ori: QHS63242.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 6944709-6944961 bp Feature: domain Description: TnpB_IS66 Location: 6944709-6944961 bp Feature: gene Location: 6945049-6945783 bp Ori: QHS63243.1 Feature: domain Description: LZ_Tnp_IS66 Location: 6945118-6945352 bp Feature: domain Description: LZ_Tnp_IS66 Location: 69451 1 8-6945352 bp Feature: domain Description: zf-IS66 Location: 6945388-6945469 bp Feature: domain Description: zf-IS66 Location: 6945388-6945469 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6945541-6945766 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6945541 -6945766 bp Feature: gene Location: 6946284-6947513 bp Ori: QHS63244.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6946497-6947151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6946497-69471 51 bp Feature: domain Description: GIIM Note: maturase Location: 6947229-6947439 bp Feature: domain Description: GIIM Note: maturase Location: 6947229-6947439 bp Feature: gene Location: 6947615-6948382 bp Ori: QHS63245.1 Feature: domain Description: DDE_Tnp_IS66 Location: 6947621-6948227 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6947621 -6948227 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6948248-6948359 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6948248-6948359 bp Feature: gene Location: 6948465-6949367 bp Feature: gene Location: 6958234-6958539 bp Ori: QHS63260.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 6958249-6958501 bp Feature: domain Description: TnpB_IS66 Location: 6958249-6958501 bp Feature: gene Location: 6958589-6959323 bp Ori: QHS63261.1 Feature: domain Description: LZ_Tnp_IS66 Location: 6958658-6958892 bp Feature: domain Description: LZ_Tnp_IS66 Location: 6958658-6958892 bp Feature: domain Description: zf-IS66 Location: 6958928-6959009 bp Feature: domain Description: zf-IS66 Location: 6958928-6959009 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6959081-6959306 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6959081 -6959306 bp Feature: gene Location: 6959824-6961053 bp Ori: QHS63262.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6960037-6960691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6960037-6960691 bp Feature: domain Description: GIIM Note: maturase Location: 6960769-6960979 bp Feature: domain Description: GIIM Note: maturase Location: 6960769-6960979 bp Feature: gene Location: 6961155-6961922 bp Ori: QHS63263.1 Feature: domain Description: DDE_Tnp_IS66 Location: 6961161-6961767 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6961 1 61 -6961 767 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6961788-6961899 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6961 788-6961 899 bp Feature: gene Location: 6962671-6962916 bp Feature: gene Location: 6962900-6963583 bp Feature: gene Location: 6964981-6966021 bp Ori: QHS63266.1 Feature: domain Description: VirE_N Location: 6965164-6965539 bp Feature: domain Description: VirE_N Location: 69651 64-6965539 bp Feature: gene Location: 6966173-6968020 bp Ori: QHS63267.1 Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 6966665-6967370 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 6966665-6967370 bp Feature: gene Location: 6968285-6970909 bp Ori: QHS63268.1 Gene: treY Feature: domain Description: AmyAc_MTSase Location: 6968312-6970637 bp Feature: domain Description: AmyAc_MTSase Location: 696831 2-6970637 bp Feature: gene Location: 6970896-6972728 bp Ori: QHS63269.1 Gene: treZ Feature: domain Description: trehalose_TreZ Location: 6970950-6972573 bp Feature: domain Description: trehalose_TreZ Location: 6970950-6972573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), RVT-Retrons
CypX (COG2124), DUF1963 (pfam09234), HxlR (pfam01638), OPHC2-like_MBL-fold (cd07720), COG3666 (Transposase ), carb_red_PTCR-like_SDR_c (cd05324), RVT-G2Lc, HTH_Tnp_Tc3_1 (pfam11427), COG4584 (Transposase ), YhcM (COG1485)
VirE_N (pfam08800), RVT-UG28b, AmyAc_MTSase (cd11336), trehalose_TreZ (TIGR02402)