myRT

myRT report for GCA_010183645.1_ASM1018364v1

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Seq: CP039810.1 Klebsiella pneumoniae strain C2660 plasmid pC2660-3-KPC, complete sequence (153556 bp)
Overview 1 RT 1: 28085-32306 bp 2 RT 2: 123665-127867 bp Neighborhood of RT #1 [28085, 32306] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [123665, 127884] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 28085-28507 bp Ori: QHU54098.1 Feature: domain Description: DUF1380 Location: 28088-28382 bp Feature: domain Description: DUF1 380 Location: 28088-28382 bp Feature: gene Location: 28504-28695 bp Feature: gene Location: 29009-30676 bp Ori: QHU54100.1 Gene: ltrA Feature: domain Description: RVT_N Location: 29057-29294 bp Feature: domain Description: RVT_N Location: 29057-29294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29345-29987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29345-29987 bp Feature: domain Description: GIIM Note: maturase Location: 30038-30272 bp Feature: domain Description: GIIM Note: maturase Location: 30038-30272 bp Feature: domain Description: HNHc Note: nucleases Location: 30482-30641 bp Feature: domain Description: HNHc Note: nucleases Location: 30482-30641 bp Feature: gene Location: 31556-31813 bp Feature: gene Location: 32076-32306 bp Feature: gene Location: 123665-124336 bp Ori: QHU54213.1 Feature: domain Description: Plasmid_stab_B Location: 123680-123887 bp Feature: domain Description: Plasmid_stab_B Location: 1 23680-1 23887 bp Feature: domain Description: Plasmid_stab_B Location: 123992-124199 bp Feature: domain Description: Plasmid_stab_B Location: 1 23992-1 241 99 bp Feature: gene Location: 124339-125310 bp Ori: QHU54214.1 Feature: domain Description: StbA Location: 124342-125287 bp Feature: domain Description: StbA Location: 1 24342-1 25287 bp Feature: gene Location: 125559-127043 bp Ori: QHU54215.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125961-126651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25961 -1 26651 bp Feature: gene Location: 127043-127294 bp Feature: gene Location: 127453-127884 bp Ori: QHU54217.1 Gene: umuD Feature: domain Description: PRK10276 Location: 127504-127867 bp Feature: domain Description: PRK1 0276 Location: 1 27504-1 27867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Plasmid_stab_B (pfam10784), StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP039809.1 Klebsiella pneumoniae strain C2660 plasmid pC2660-2, complete sequence (205652 bp)
Overview 1 RT 1: 195889-198655 bp Neighborhood of RT #1 [195889, 198669] RVT-GII PRK10276 Feature: gene Location: 195889-196119 bp Feature: gene Location: 196287-196361 bp Feature: gene Location: 196354-197838 bp Ori: QHU54045.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196756-197446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196756-197446 bp Feature: gene Location: 197838-198089 bp Feature: gene Location: 198244-198669 bp Ori: QHU54047.1 Gene: umuD Feature: domain Description: PRK10276 Location: 198247-198655 bp Feature: domain Description: PRK102 76 Location: 1982 47-198655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP039808.1 Klebsiella pneumoniae strain C2660 chromosome, complete genome (5494793 bp)
Overview 1 RT 1: 1248940-1253825 bp 2 RT 2: 1412982-1415758 bp 3 RT 3: 1873228-1878100 bp 4 RT 4: 1893841-1900103 bp 5 RT 5: 3142778-3146916 bp 6 RT 6: 3293904-3298003 bp 7 RT 7: 3366736-3370998 bp 8 RT 8: 3721592-3725618 bp 9 RT 9: 3729303-3734141 bp Neighborhood of RT #1 [1248940, 1253830] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1412982, 1415758] RVT-GII Neighborhood of RT #3 [1873228, 1878114] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1893841, 1900103] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3142778, 3146916] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3293904, 3298014] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3366736, 3371036] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3721592, 3726502] DinI RVT-GII Phage_GPA Neighborhood of RT #9 [3729303, 3734191] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1248940-1251324 bp Ori: QHU49752.1 Feature: domain Description: Phage_GPA Location: 1249504-1250470 bp Feature: domain Description: Phage_GPA Location: 1249504-1250470 bp Feature: gene Location: 1251554-1251805 bp Feature: gene Location: 1251805-1253289 bp Ori: QHU49754.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1252207-1252897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1252207-1252897 bp Feature: gene Location: 1253397-1253585 bp Feature: gene Location: 1253597-1253830 bp Ori: QHU49756.1 Feature: domain Description: DinI Location: 1253642-1253825 bp Feature: domain Description: DinI Location: 1253 642-1253 825 bp Feature: gene Location: 1412982-1413185 bp Feature: gene Location: 1413178-1413516 bp Feature: gene Location: 1413613-1415097 bp Ori: QHU49914.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414015-1414705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414015-1414705 bp Feature: gene Location: 1415097-1415348 bp Feature: gene Location: 1415501-1415758 bp Feature: gene Location: 1873228-1874397 bp Ori: QHU50304.1 Gene: dacD Feature: domain Description: dacD Location: 1873237-1874392 bp Feature: domain Description: dacD Location: 1873 23 7-18743 92 bp Feature: gene Location: 1874667-1874918 bp Feature: gene Location: 1874918-1876402 bp Ori: QHU50306.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1875320-1876010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18753 20-1876010 bp Feature: gene Location: 1876484-1876957 bp Ori: QHU50307.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1876487-1876946 bp Feature: domain Description: PRK10016 Location: 1876487-1876946 bp Feature: gene Location: 1877056-1878114 bp Ori: QHU50308.1 Feature: domain Description: YccC Location: 1877062-1878100 bp Feature: domain Description: YccC Location: 1877062-1878100 bp Feature: gene Location: 1893841-1894944 bp Ori: QHU50327.1 Feature: domain Description: STKc_PknB_like Location: 1893973-1894414 bp Feature: domain Description: STKc_PknB_like Location: 1893 973 -1894414 bp Feature: gene Location: 1895014-1895256 bp Feature: gene Location: 1895503-1896603 bp Ori: QHU50328.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1895686-1896214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1895686-1896214 bp Feature: gene Location: 1896718-1898964 bp Ori: QHU50329.1 Feature: domain Description: AAA_15 Location: 1896721-1897729 bp Feature: domain Description: AAA_15 Location: 1896721-1897729 bp Feature: gene Location: 1899873-1900103 bp Feature: gene Location: 3142778-3144043 bp Ori: QHU51476.1 Gene: umuC Feature: domain Description: umuC Location: 3142781-3144041 bp Feature: domain Description: umuC Location: 3 142781-3 144041 bp Feature: gene Location: 3144045-3144464 bp Ori: QHU51477.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3144048-3144459 bp Feature: domain Description: PRK10276 Location: 3 144048-3 144459 bp Feature: gene Location: 3144544-3146028 bp Ori: QHU51478.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3144946-3145636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 144946-3 14563 6 bp Feature: gene Location: 3146028-3146279 bp Feature: gene Location: 3146827-3146916 bp Feature: gene Location: 3293904-3295169 bp Ori: QHU51625.1 Gene: umuC Feature: domain Description: umuC Location: 3293907-3295167 bp Feature: domain Description: umuC Location: 3 293 907-3 295167 bp Feature: gene Location: 3295172-3295591 bp Ori: QHU51626.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3295175-3295586 bp Feature: domain Description: PRK10276 Location: 3 295175-3 295586 bp Feature: gene Location: 3295670-3297154 bp Ori: QHU51627.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3296072-3296762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 296072-3 296762 bp Feature: gene Location: 3297154-3297405 bp Feature: gene Location: 3297772-3298014 bp Ori: QHU51629.1 Feature: domain Description: DinI Location: 3297823-3298003 bp Feature: domain Description: DinI Location: 3 297823 -3 298003 bp Feature: gene Location: 3366736-3367026 bp Feature: gene Location: 3367038-3367271 bp Ori: QHU51700.1 Feature: domain Description: PRK10597 Location: 3367041-3367266 bp Feature: domain Description: PRK10597 Location: 3 3 67041-3 3 67266 bp Feature: gene Location: 3367350-3368834 bp Ori: QHU51701.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3367752-3368442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 67752-3 3 68442 bp Feature: gene Location: 3368834-3369085 bp Feature: gene Location: 3369675-3371036 bp Ori: QHU51703.1 Feature: domain Description: PRK05318 Location: 3369699-3370998 bp Feature: domain Description: PRK053 18 Location: 3 3 69699-3 3 70998 bp Feature: gene Location: 3721592-3721897 bp Ori: QHU52027.1 Feature: domain Description: DinI Location: 3721706-3721892 bp Feature: domain Description: DinI Location: 3 721706-3 721892 bp Feature: gene Location: 3721836-3722024 bp Feature: gene Location: 3722125-3723609 bp Ori: QHU52028.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3722527-3723217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 722527-3 723 217 bp Feature: gene Location: 3723609-3723860 bp Feature: gene Location: 3724088-3726502 bp Ori: QHU52030.1 Feature: domain Description: Phage_GPA Location: 3724652-3725618 bp Feature: domain Description: Phage_GPA Location: 3 724652-3 725618 bp Feature: gene Location: 3729303-3730181 bp Ori: QHU53774.1 Feature: domain Description: Phage_CI_repr Location: 3729330-3729513 bp Feature: domain Description: Phage_CI_repr Location: 3 7293 3 0-3 729513 bp Feature: domain Description: Phage_CI_repr Location: 3729642-3729834 bp Feature: domain Description: Phage_CI_repr Location: 3 729642-3 72983 4 bp Feature: domain Description: Phage_CI_C Location: 3729861-3730155 bp Feature: domain Description: Phage_CI_C Location: 3 729861-3 73 0155 bp Feature: gene Location: 3730193-3731137 bp Feature: gene Location: 3731236-3732720 bp Ori: QHU52039.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3731638-3732328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 73 163 8-3 73 23 28 bp Feature: gene Location: 3732720-3732971 bp Feature: gene Location: 3733139-3734191 bp Ori: QHU52041.1 Feature: domain Description: int Location: 3733142-3734141 bp Feature: domain Description: int Location: 3 73 3 142-3 73 4141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP039812.1 Klebsiella pneumoniae strain C2660 plasmid pC2660-5, complete sequence (11970 bp)
Overview 1 RT 1: 3703-8137 bp Neighborhood of RT #1 [3703, 8137] Cloacin_immun Cloacin E2R135 Cytotoxic RVT-GII Feature: gene Location: 3703-3960 bp Ori: QHU54330.1 Feature: domain Description: Cloacin_immun Location: 3709-3946 bp Feature: domain Description: Cloacin_immun Location: 3709-394 6 bp Feature: gene Location: 3970-5655 bp Ori: QHU54331.1 Feature: domain Description: Cloacin Location: 4105-4927 bp Feature: domain Description: Cloacin Location: 4 105-4 927 bp Feature: domain Description: E2R135 Location: 4936-5341 bp Feature: domain Description: E2R135 Location: 4 936-534 1 bp Feature: domain Description: Cytotoxic Location: 5395-5644 bp Feature: domain Description: Cytotoxic Location: 5395-564 4 bp Feature: gene Location: 5760-7244 bp Ori: QHU54332.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6162-6852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6162-6852 bp Feature: gene Location: 7244-7495 bp Feature: gene Location: 7892-8137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cloacin_immun (pfam03513), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), RVT-GII