myRT

myRT report for GCA_010183685.1_ASM1018368v1

Download annotations/find similar RTs

Seq: CP039822.1 Klebsiella pneumoniae strain C2414 plasmid pC2414-4, complete sequence (11970 bp)
Overview 1 RT 1: 3700-8134 bp Neighborhood of RT #1 [3700, 8134] Cloacin_immun Cloacin E2R135 Cytotoxic RVT-GII Feature: gene Location: 3700-3957 bp Ori: QHU65475.1 Feature: domain Description: Cloacin_immun Location: 3706-3943 bp Feature: domain Description: Cloacin_immun Location: 3706-3943 bp Feature: gene Location: 3967-5652 bp Ori: QHU65476.1 Feature: domain Description: Cloacin Location: 4102-4924 bp Feature: domain Description: Cloacin Location: 41 02-4924 bp Feature: domain Description: E2R135 Location: 4933-5338 bp Feature: domain Description: E2R1 35 Location: 4933-5338 bp Feature: domain Description: Cytotoxic Location: 5392-5641 bp Feature: domain Description: Cytotoxic Location: 5392-5641 bp Feature: gene Location: 5757-7241 bp Ori: QHU65477.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6159-6849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 59-6849 bp Feature: gene Location: 7241-7492 bp Feature: gene Location: 7889-8134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cloacin_immun (pfam03513), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), RVT-GII

Seq: CP039819.1 Klebsiella pneumoniae strain C2414 chromosome, complete genome (5588118 bp)
Overview 1 RT 1: 38150-41254 bp 2 RT 2: 1265318-1269219 bp 3 RT 3: 1386429-1391314 bp 4 RT 4: 1550471-1553247 bp 5 RT 5: 2005639-2010511 bp 6 RT 6: 2026252-2032514 bp 7 RT 7: 3186684-3189192 bp 8 RT 8: 3267433-3271571 bp 9 RT 9: 3419790-3423889 bp 10 RT 10: 3492622-3496884 bp 11 RT 11: 3576466-3579735 bp 12 RT 12: 3811037-3816941 bp 13 RT 13: 3901248-3905803 bp Neighborhood of RT #1 [38150, 41268] DUF1472 RVT-GII PRK10276 Neighborhood of RT #2 [1265318, 1269219] RVT-Retrons DUF1493 Neighborhood of RT #3 [1386429, 1391319] Phage_GPA RVT-GII DinI Neighborhood of RT #4 [1550471, 1553247] RVT-GII Neighborhood of RT #5 [2005639, 2010525] dacD RVT-GII PRK10016 YccC Neighborhood of RT #6 [2026252, 2032514] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #7 [3186684, 3189192] RVT-GII Neighborhood of RT #8 [3267433, 3271571] umuC PRK10276 RVT-GII Neighborhood of RT #9 [3419790, 3423900] umuC PRK10276 RVT-GII DinI Neighborhood of RT #10 [3492622, 3496922] PRK10597 RVT-GII PRK05318 Neighborhood of RT #11 [3576466, 3579746] PRK05451 RVT-GII PRK10597 Neighborhood of RT #12 [3811037, 3816991] AIPR IS5 RVT-GII int Neighborhood of RT #13 [3901248, 3905803] UvrB RVT-GII Feature: gene Location: 38150-38242 bp Feature: domain Description: DUF1472 Location: 38162-38228 bp Feature: domain Description: DUF1472 Location: 38162 -382 2 8 bp Feature: gene Location: 38466-38696 bp Feature: gene Location: 38930-40438 bp Ori: QHU59854.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39332-40046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39332 -40046 bp Feature: gene Location: 40438-40689 bp Feature: gene Location: 40843-41268 bp Ori: QHU59856.1 Gene: umuD Feature: domain Description: PRK10276 Location: 40846-41254 bp Feature: domain Description: PRK102 76 Location: 40846-412 54 bp Feature: gene Location: 1265318-1265701 bp Feature: gene Location: 1266044-1266562 bp Feature: gene Location: 1266552-1267586 bp Ori: QHU64981.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1266555-1267131 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12 66555-12 67131 bp Feature: gene Location: 1268438-1268785 bp Ori: QHU61011.1 Feature: domain Description: DUF1493 Location: 1268456-1268783 bp Feature: domain Description: DUF1493 Location: 12 68456-12 68783 bp Feature: gene Location: 1268770-1269219 bp Feature: gene Location: 1386429-1388813 bp Ori: QHU61132.1 Feature: domain Description: Phage_GPA Location: 1386993-1387959 bp Feature: domain Description: Phage_GPA Location: 1386993-1387959 bp Feature: gene Location: 1389043-1389294 bp Feature: gene Location: 1389294-1390778 bp Ori: QHU61134.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1389696-1390386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1389696-1390386 bp Feature: gene Location: 1390886-1391074 bp Feature: gene Location: 1391086-1391319 bp Ori: QHU61136.1 Feature: domain Description: DinI Location: 1391131-1391314 bp Feature: domain Description: DinI Location: 1391131-1391314 bp Feature: gene Location: 1550471-1550674 bp Feature: gene Location: 1550667-1551005 bp Feature: gene Location: 1551102-1552586 bp Ori: QHU61294.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1551504-1552194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1551504-1552 194 bp Feature: gene Location: 1552586-1552837 bp Feature: gene Location: 1552990-1553247 bp Feature: gene Location: 2005639-2006808 bp Ori: QHU61680.1 Gene: dacD Feature: domain Description: dacD Location: 2005648-2006803 bp Feature: domain Description: dacD Location: 2 005648-2 006803 bp Feature: gene Location: 2007078-2007329 bp Feature: gene Location: 2007329-2008813 bp Ori: QHU61682.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2007731-2008421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 007731-2 00842 1 bp Feature: gene Location: 2008895-2009368 bp Ori: QHU61683.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 2008898-2009357 bp Feature: domain Description: PRK10016 Location: 2 008898-2 009357 bp Feature: gene Location: 2009467-2010525 bp Ori: QHU61684.1 Feature: domain Description: YccC Location: 2009473-2010511 bp Feature: domain Description: YccC Location: 2 009473-2 010511 bp Feature: gene Location: 2026252-2027355 bp Ori: QHU61703.1 Feature: domain Description: STKc_PknB_like Location: 2026384-2026825 bp Feature: domain Description: STKc_PknB_like Location: 2 02 6384-2 02 682 5 bp Feature: gene Location: 2027425-2027667 bp Feature: gene Location: 2027914-2029014 bp Ori: QHU61704.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2028097-2028625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 02 8097-2 02 862 5 bp Feature: gene Location: 2029129-2031375 bp Ori: QHU61705.1 Feature: domain Description: AAA_15 Location: 2029132-2030140 bp Feature: domain Description: AAA_15 Location: 2 02 9132 -2 030140 bp Feature: gene Location: 2032284-2032514 bp Feature: gene Location: 3186684-3186968 bp Feature: gene Location: 3186982-3187053 bp Feature: gene Location: 3187046-3188530 bp Ori: QHU62754.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3187448-3188138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3187448-3188138 bp Feature: gene Location: 3188530-3188781 bp Feature: gene Location: 3188983-3189192 bp Feature: gene Location: 3267433-3268698 bp Ori: QHU62845.1 Gene: umuC Feature: domain Description: umuC Location: 3267436-3268696 bp Feature: domain Description: umuC Location: 32 67436-32 68696 bp Feature: gene Location: 3268700-3269119 bp Ori: QHU62846.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3268703-3269114 bp Feature: domain Description: PRK102 76 Location: 32 68703-32 69114 bp Feature: gene Location: 3269199-3270683 bp Ori: QHU62847.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269601-3270291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 69601-32 702 91 bp Feature: gene Location: 3270683-3270934 bp Feature: gene Location: 3271482-3271571 bp Feature: gene Location: 3419790-3421055 bp Ori: QHU62995.1 Gene: umuC Feature: domain Description: umuC Location: 3419793-3421053 bp Feature: domain Description: umuC Location: 3419793-342 1053 bp Feature: gene Location: 3421058-3421477 bp Ori: QHU62996.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3421061-3421472 bp Feature: domain Description: PRK102 76 Location: 342 1061-342 1472 bp Feature: gene Location: 3421556-3423040 bp Ori: QHU62997.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3421958-3422648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 1958-342 2 648 bp Feature: gene Location: 3423040-3423291 bp Feature: gene Location: 3423658-3423900 bp Ori: QHU62999.1 Feature: domain Description: DinI Location: 3423709-3423889 bp Feature: domain Description: DinI Location: 342 3709-342 3889 bp Feature: gene Location: 3492622-3492912 bp Feature: gene Location: 3492924-3493157 bp Ori: QHU63070.1 Feature: domain Description: PRK10597 Location: 3492927-3493152 bp Feature: domain Description: PRK10597 Location: 3492 92 7-3493152 bp Feature: gene Location: 3493236-3494720 bp Ori: QHU63071.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3493638-3494328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3493638-349432 8 bp Feature: gene Location: 3494720-3494971 bp Feature: gene Location: 3495561-3496922 bp Ori: QHU63073.1 Feature: domain Description: PRK05318 Location: 3495585-3496884 bp Feature: domain Description: PRK05318 Location: 3495585-3496884 bp Feature: gene Location: 3576466-3577512 bp Ori: QHU63144.1 Gene: pyrC Feature: domain Description: PRK05451 Location: 3576481-3577507 bp Feature: domain Description: PRK05451 Location: 3576481-3577507 bp Feature: gene Location: 3577538-3577612 bp Feature: gene Location: 3577605-3579089 bp Ori: QHU63145.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3578007-3578697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3578007-3578697 bp Feature: gene Location: 3579089-3579340 bp Feature: gene Location: 3579495-3579746 bp Ori: QHU63147.1 Gene: dinI Feature: domain Description: PRK10597 Location: 3579498-3579735 bp Feature: domain Description: PRK10597 Location: 3579498-3579735 bp Feature: gene Location: 3811037-3812779 bp Ori: QHU63355.1 Feature: domain Description: AIPR Location: 3811736-3812402 bp Feature: domain Description: AIPR Location: 3811736-3812 402 bp Feature: gene Location: 3813127-3814107 bp Ori: QHU63356.1 Feature: domain Description: IS5 Location: 3813316-3814093 bp Feature: domain Description: IS5 Location: 3813316-3814093 bp Feature: gene Location: 3814207-3815520 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3814609-3815299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3814609-38152 99 bp Feature: gene Location: 3815520-3815771 bp Feature: gene Location: 3815939-3816991 bp Ori: QHU63358.1 Feature: domain Description: int Location: 3815942-3816941 bp Feature: domain Description: int Location: 3815942 -3816941 bp Feature: gene Location: 3901248-3903269 bp Ori: QHU63434.1 Gene: uvrB Feature: domain Description: UvrB Location: 3901254-3903255 bp Feature: domain Description: UvrB Location: 39012 54-39032 55 bp Feature: gene Location: 3903480-3903731 bp Feature: gene Location: 3903731-3905215 bp Ori: QHU63436.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3904133-3904823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3904133-390482 3 bp Feature: gene Location: 3905412-3905591 bp Feature: gene Location: 3905591-3905803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1472 (pfam07339), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-Retrons, DUF1493 (pfam07377), Phage_GPA (pfam05840), DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)
STKc_PknB_like (cd14014), AAA_15 (pfam13175), umuC (PRK03609), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK05451 (dihydroorotase; Provisional), AIPR (pfam10592), IS5 (COG3039), int (PHA02601), UvrB (pfam12344)

Seq: CP039821.1 Klebsiella pneumoniae strain C2414 plasmid pC2414-3-NDM, complete sequence (63046 bp)
Overview 1 RT 1: 21072-24989 bp Neighborhood of RT #1 [21072, 24989] VirB11 PLDc_Nuc RVT-GII Feature: gene Location: 21072-22067 bp Ori: QHU65424.1 Feature: domain Description: VirB11 Location: 21117-22026 bp Feature: domain Description: VirB11 Location: 21117-22026 bp Feature: gene Location: 22067-22600 bp Ori: QHU65425.1 Feature: domain Description: PLDc_Nuc Location: 22148-22571 bp Feature: domain Description: PLDc_Nuc Location: 22148-22571 bp Feature: gene Location: 22954-24438 bp Ori: QHU65426.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23356-24046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 3 56-24046 bp Feature: gene Location: 24438-24689 bp Feature: gene Location: 24771-24989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB11 (TIGR02788), PLDc_Nuc (cd09170), RVT-GII

Seq: CP039820.1 Klebsiella pneumoniae strain C2414 plasmid pC2414-2-KPC, complete sequence (172001 bp)
Overview 1 RT 1: 25767-29988 bp 2 RT 2: 106630-110712 bp Neighborhood of RT #1 [25767, 29988] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [106630, 110849] PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 25767-26189 bp Ori: QHU65211.1 Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: domain Description: DUF1380 Location: 25770-26064 bp Feature: gene Location: 26186-26377 bp Feature: gene Location: 26691-28358 bp Ori: QHU65213.1 Gene: ltrA Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: domain Description: RVT_N Location: 26739-26976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27027-27669 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: GIIM Note: maturase Location: 27720-27954 bp Feature: domain Description: HNHc Note: nucleases Location: 28164-28323 bp Feature: domain Description: HNHc Note: nucleases Location: 28164 -28323 bp Feature: gene Location: 29238-29495 bp Feature: gene Location: 29758-29988 bp Feature: gene Location: 106630-107061 bp Ori: QHU65295.1 Gene: umuD Feature: domain Description: PRK10276 Location: 106681-107044 bp Feature: domain Description: PRK10276 Location: 106681-10704 4 bp Feature: gene Location: 107220-107471 bp Feature: gene Location: 107471-108955 bp Ori: QHU65297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107873-108563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107873-108563 bp Feature: gene Location: 109204-110175 bp Ori: QHU65298.1 Feature: domain Description: StbA Location: 109207-110152 bp Feature: domain Description: StbA Location: 109207-110152 bp Feature: gene Location: 110178-110849 bp Ori: QHU65299.1 Feature: domain Description: Plasmid_stab_B Location: 110193-110400 bp Feature: domain Description: Plasmid_stab_B Location: 110193-1104 00 bp Feature: domain Description: Plasmid_stab_B Location: 110505-110712 bp Feature: domain Description: Plasmid_stab_B Location: 110505-110712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)