myRT

myRT report for GCA_010231485.1_ASM1023148v1

Download annotations/find similar RTs

Seq: CP034931.1 Shigella flexneri strain 2013C-3749 chromosome, complete genome (4654019 bp)
Overview 1 RT 1: 1201309-1204526 bp 2 RT 2: 2393151-2396659 bp 3 RT 3: 3348789-3356164 bp Neighborhood of RT #1 [1201309, 1204591] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [2393151, 2396667] PHA02517 RVT-GII GIIM PHA02517 Inovirus_Gp2 Neighborhood of RT #3 [3348789, 3356229] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1201309-1201623 bp Feature: gene Location: 1201674-1202120 bp Feature: domain Description: PHA02517 Location: 1201677-1202118 bp Feature: domain Description: PHA0251 7 Location: 1 201 677-1 2021 1 8 bp Feature: gene Location: 1202237-1203760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202510-1203242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20251 0-1 203242 bp Feature: domain Description: GIIM Note: maturase Location: 1203317-1203515 bp Feature: domain Description: GIIM Note: maturase Location: 1 20331 7-1 20351 5 bp Feature: gene Location: 1203714-1204139 bp Feature: gene Location: 1204352-1204591 bp Feature: domain Description: PHA02517 Location: 1204355-1204526 bp Feature: domain Description: PHA0251 7 Location: 1 204355-1 204526 bp Feature: gene Location: 2393151-2393279 bp Feature: gene Location: 2393327-2393608 bp Feature: domain Description: PHA02517 Location: 2393333-2393543 bp Feature: domain Description: PHA0251 7 Location: 2393333-2393543 bp Feature: gene Location: 2394200-2395723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2394473-2395205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2394473-2395205 bp Feature: domain Description: GIIM Note: maturase Location: 2395280-2395478 bp Feature: domain Description: GIIM Note: maturase Location: 2395280-2395478 bp Feature: gene Location: 2395900-2396286 bp Feature: domain Description: PHA02517 Location: 2395903-2396284 bp Feature: domain Description: PHA0251 7 Location: 2395903-2396284 bp Feature: gene Location: 2396326-2396667 bp Feature: domain Description: Inovirus_Gp2 Location: 2396395-2396659 bp Feature: domain Description: Inovirus_Gp2 Location: 2396395-2396659 bp Feature: gene Location: 3348789-3352907 bp Feature: domain Description: ESPR Location: 3348792-3348861 bp Feature: domain Description: ESPR Location: 3348792-3348861 bp Feature: domain Description: Peptidase_S6 Location: 3348942-3351114 bp Feature: domain Description: Peptidase_S6 Location: 3348942-3351 1 1 4 bp Feature: domain Description: autotrans_barl Location: 3351678-3352905 bp Feature: domain Description: autotrans_barl Location: 3351 678-3352905 bp Feature: gene Location: 3353072-3353458 bp Feature: domain Description: PHA02517 Location: 3353075-3353456 bp Feature: domain Description: PHA0251 7 Location: 3353075-3353456 bp Feature: gene Location: 3353635-3355158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353908-3354640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3353908-3354640 bp Feature: domain Description: GIIM Note: maturase Location: 3354715-3354913 bp Feature: domain Description: GIIM Note: maturase Location: 335471 5-335491 3 bp Feature: gene Location: 3355112-3355537 bp Feature: gene Location: 3355750-3356229 bp Feature: domain Description: PHA02517 Location: 3355810-3356164 bp Feature: domain Description: PHA0251 7 Location: 335581 0-33561 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: CP034933.1 Shigella flexneri strain 2013C-3749 plasmid p2013C-3749-2, complete sequence (223405 bp)
Overview 1 RT 1: 91731-95057 bp 2 RT 2: 189369-192504 bp Neighborhood of RT #1 [91731, 95071] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [189369, 192504] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 91731-92378 bp Feature: domain Description: PHA02517 Location: 91734-92376 bp Feature: domain Description: PHA02 517 Location: 91734-92 376 bp Feature: gene Location: 92472-92603 bp Feature: domain Description: DDE_Tnp_IS66 Location: 92484-92577 bp Feature: domain Description: DDE_Tnp_IS66 Location: 92 484-92 577 bp Feature: gene Location: 93080-94297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93266-93920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932 66-9392 0 bp Feature: domain Description: GIIM Note: maturase Location: 93998-94220 bp Feature: domain Description: GIIM Note: maturase Location: 93998-942 2 0 bp Feature: gene Location: 94413-94559 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 94425-94536 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9442 5-94536 bp Feature: gene Location: 94586-95071 bp Feature: domain Description: COG3547 Location: 94604-95057 bp Feature: domain Description: COG3547 Location: 94604-95057 bp Feature: gene Location: 189369-190118 bp Feature: domain Description: PAP2_acid_phosphatase Location: 189444-190098 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 189444-190098 bp Feature: gene Location: 190514-190714 bp Feature: domain Description: Tra5 Location: 190523-190697 bp Feature: domain Description: Tra5 Location: 19052 3-190697 bp Feature: gene Location: 190727-191530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 191027-191522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19102 7-19152 2 bp Feature: gene Location: 191583-191909 bp Feature: domain Description: GIIM Note: maturase Location: 191616-191835 bp Feature: domain Description: GIIM Note: maturase Location: 191616-191835 bp Feature: gene Location: 192262-192504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801)