myRT

myRT report for GCA_010365345.1_ASM1036534v1

Download annotations/find similar RTs

Seq: CP048310.1 Escherichia coli strain 32-4 chromosome, complete genome (4853092 bp)
Overview 1 RT 1: 86258-93015 bp 2 RT 2: 738882-745193 bp 3 RT 3: 2033070-2043629 bp 4 RT 4: 4219824-4225025 bp Neighborhood of RT #1 [86258, 93015] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [738882, 745201] IS285 InsE RVT-GII GIIM PHA02517 LldP Neighborhood of RT #3 [2033070, 2043631] DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 PHA02517 RVT-GII GIIM InsE PRK10396 Neighborhood of RT #4 [4219824, 4225132] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 86258-87682 bp Feature: domain Description: LZ_Tnp_IS66 Location: 86438-86648 bp Feature: domain Description: LZ_Tnp_IS66 Location: 86438-86648 bp Feature: domain Description: zf-IS66 Location: 86672-86804 bp Feature: domain Description: zf-IS66 Location: 86672-86804 bp Feature: domain Description: DDE_Tnp_IS66 Location: 86849-87683 bp Feature: domain Description: DDE_Tnp_IS66 Location: 86849-87683 bp Feature: gene Location: 87913-88651 bp Feature: gene Location: 89324-90832 bp Ori: QHW47496.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89582-90314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89582-9031 4 bp Feature: domain Description: GIIM Note: maturase Location: 90389-90587 bp Feature: domain Description: GIIM Note: maturase Location: 90389-90587 bp Feature: gene Location: 90922-91395 bp Feature: domain Description: PHA02517 Location: 90928-91393 bp Feature: domain Description: PHA0251 7 Location: 90928-91 393 bp Feature: gene Location: 91436-93015 bp Feature: gene Location: 738882-739673 bp Feature: domain Description: IS285 Location: 738885-739662 bp Feature: domain Description: IS285 Location: 738885-739662 bp Feature: gene Location: 739729-740468 bp Feature: domain Description: InsE Location: 739732-740068 bp Feature: domain Description: InsE Location: 739732-740068 bp Feature: gene Location: 741141-742649 bp Ori: QHW47511.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741399-742131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 399-7421 31 bp Feature: domain Description: GIIM Note: maturase Location: 742206-742404 bp Feature: domain Description: GIIM Note: maturase Location: 742206-742404 bp Feature: gene Location: 742730-743218 bp Feature: domain Description: PHA02517 Location: 742733-743207 bp Feature: domain Description: PHA0251 7 Location: 742733-743207 bp Feature: gene Location: 743648-745201 bp Ori: QHW44004.1 Feature: domain Description: LldP Location: 743660-745193 bp Feature: domain Description: LldP Location: 743660-7451 93 bp Feature: gene Location: 2033070-2038805 bp Ori: QHW45058.1 Feature: domain Description: DUF4011 Location: 2033160-2033994 bp Feature: domain Description: DUF401 1 Location: 20331 60-2033994 bp Feature: domain Description: DEXXQc_SF1 Location: 2034351-2037453 bp Feature: domain Description: DEXXQc_SF1 Location: 2034351 -2037453 bp Feature: domain Description: SF1_C_Upf1 Location: 2037462-2037990 bp Feature: domain Description: SF1 _C_Upf1 Location: 2037462-2037990 bp Feature: domain Description: MTES_1575 Location: 2038119-2038410 bp Feature: domain Description: MTES_1 575 Location: 20381 1 9-203841 0 bp Feature: gene Location: 2039026-2039484 bp Feature: domain Description: PHA02517 Location: 2039029-2039476 bp Feature: domain Description: PHA0251 7 Location: 2039029-2039476 bp Feature: gene Location: 2039565-2041073 bp Ori: QHW47573.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2039823-2040555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2039823-2040555 bp Feature: domain Description: GIIM Note: maturase Location: 2040630-2040828 bp Feature: domain Description: GIIM Note: maturase Location: 2040630-2040828 bp Feature: gene Location: 2041746-2042431 bp Feature: domain Description: InsE Location: 2041758-2042022 bp Feature: domain Description: InsE Location: 2041 758-2042022 bp Feature: gene Location: 2042966-2043631 bp Ori: QHW45059.1 Gene: yecA Feature: domain Description: PRK10396 Location: 2042969-2043629 bp Feature: domain Description: PRK1 0396 Location: 2042969-2043629 bp Feature: gene Location: 4219824-4220713 bp Feature: gene Location: 4220755-4221857 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4220764-4221016 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4220764-4221 01 6 bp Feature: gene Location: 4222312-4223244 bp Ori: QHW46969.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4222414-4223008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 422241 4-4223008 bp Feature: gene Location: 4223246-4224214 bp Feature: gene Location: 4224860-4225132 bp Ori: QHW46970.1 Feature: domain Description: PRK09678 Location: 4224869-4225025 bp Feature: domain Description: PRK09678 Location: 4224869-4225025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), IS285 (COG3328), InsE (COG2963), LldP (COG1620), DUF4011 (pfam13195)
DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), PRK10396 (hypothetical protein; Provisional), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)