myRT

myRT report for GCA_010365505.1_ASM1036550v1

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Seq: CP048371.1 Escherichia coli strain 163 chromosome, complete genome (4819649 bp)
Overview 1 RT 1: 516673-521381 bp 2 RT 2: 822457-828848 bp 3 RT 3: 2750837-2756804 bp 4 RT 4: 3707940-3712225 bp 5 RT 5: 4133172-4137466 bp 6 RT 6: 4147112-4155913 bp Neighborhood of RT #1 [516673, 521383] YhcG InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [822457, 828874] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #3 [2750837, 2756804] Peptidase_S74 APC_N_CC InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3707940, 3712225] DUF3387 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4133172, 4137468] PHA02517 RVT-GII GIIM InsE PRK09183 Neighborhood of RT #6 [4147112, 4156020] CE4_Ecf1_like_5s CE4_Ecf1_like_5s InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 516673-517533 bp Ori: QHW81982.1 Feature: domain Description: YhcG Location: 516832-517303 bp Feature: domain Description: YhcG Location: 51 6832-51 7303 bp Feature: gene Location: 517621-518360 bp Feature: domain Description: InsE Location: 517624-517963 bp Feature: domain Description: InsE Location: 51 7624-51 7963 bp Feature: gene Location: 519033-520541 bp Ori: QHW85653.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 519291-520023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 9291 -520023 bp Feature: domain Description: GIIM Note: maturase Location: 520098-520296 bp Feature: domain Description: GIIM Note: maturase Location: 520098-520296 bp Feature: gene Location: 520631-521104 bp Feature: domain Description: PHA02517 Location: 520637-521102 bp Feature: domain Description: PHA0251 7 Location: 520637-521 1 02 bp Feature: gene Location: 521147-521383 bp Feature: domain Description: DUF1016_N Location: 521204-521381 bp Feature: domain Description: DUF1 01 6_N Location: 521 204-521 381 bp Feature: gene Location: 822457-823512 bp Ori: QHW82255.1 Feature: domain Description: YesN Location: 822460-822850 bp Feature: domain Description: YesN Location: 822460-822850 bp Feature: domain Description: YesN Location: 823192-823489 bp Feature: domain Description: YesN Location: 8231 92-823489 bp Feature: gene Location: 823529-824758 bp Ori: QHW82256.1 Feature: domain Description: YesM Location: 824009-824750 bp Feature: domain Description: YesM Location: 824009-824750 bp Feature: gene Location: 825341-825862 bp Ori: QHW82257.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825347-825629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825347-825629 bp Feature: domain Description: GIIM Note: maturase Location: 825677-825857 bp Feature: domain Description: GIIM Note: maturase Location: 825677-825857 bp Feature: gene Location: 826038-826429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826368-826428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826368-826428 bp Feature: gene Location: 826915-827820 bp Feature: gene Location: 827957-828874 bp Ori: QHW82259.1 Feature: domain Description: PFLE_PFLC Location: 827993-828848 bp Feature: domain Description: PFLE_PFLC Location: 827993-828848 bp Feature: gene Location: 2750837-2751367 bp Ori: QHW85751.1 Feature: domain Description: Peptidase_S74 Location: 2750936-2751083 bp Feature: domain Description: Peptidase_S74 Location: 2750936-2751 083 bp Feature: domain Description: APC_N_CC Location: 2751236-2751359 bp Feature: domain Description: APC_N_CC Location: 2751 236-2751 359 bp Feature: gene Location: 2751369-2752108 bp Feature: domain Description: InsE Location: 2751372-2751711 bp Feature: domain Description: InsE Location: 2751 372-2751 71 1 bp Feature: gene Location: 2752781-2754289 bp Ori: QHW85752.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2753039-2753771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2753039-2753771 bp Feature: domain Description: GIIM Note: maturase Location: 2753846-2754044 bp Feature: domain Description: GIIM Note: maturase Location: 2753846-2754044 bp Feature: gene Location: 2754379-2754852 bp Feature: domain Description: PHA02517 Location: 2754385-2754850 bp Feature: domain Description: PHA0251 7 Location: 2754385-2754850 bp Feature: gene Location: 2754894-2756804 bp Feature: gene Location: 3707940-3708971 bp Feature: domain Description: DUF3387 Location: 3707964-3708960 bp Feature: domain Description: DUF3387 Location: 3707964-3708960 bp Feature: gene Location: 3708982-3709470 bp Feature: domain Description: PHA02517 Location: 3708985-3709459 bp Feature: domain Description: PHA0251 7 Location: 3708985-3709459 bp Feature: gene Location: 3709551-3711059 bp Ori: QHW85784.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3709809-3710541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3709809-371 0541 bp Feature: domain Description: GIIM Note: maturase Location: 3710616-3710814 bp Feature: domain Description: GIIM Note: maturase Location: 371 061 6-371 081 4 bp Feature: gene Location: 3711732-3712157 bp Feature: domain Description: PHA02517 Location: 3711822-3712158 bp Feature: domain Description: PHA0251 7 Location: 371 1 822-371 21 58 bp Feature: gene Location: 3712145-3712225 bp Feature: gene Location: 4133172-4133429 bp Feature: gene Location: 4133512-4133999 bp Feature: domain Description: PHA02517 Location: 4133515-4133686 bp Feature: domain Description: PHA0251 7 Location: 41 3351 5-41 33686 bp Feature: gene Location: 4134080-4135588 bp Ori: QHW85802.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4134338-4135070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 34338-41 35070 bp Feature: domain Description: GIIM Note: maturase Location: 4135145-4135343 bp Feature: domain Description: GIIM Note: maturase Location: 41 351 45-41 35343 bp Feature: gene Location: 4136261-4137000 bp Feature: domain Description: InsE Location: 4136264-4136603 bp Feature: domain Description: InsE Location: 41 36264-41 36603 bp Feature: gene Location: 4137079-4137468 bp Ori: QHW85803.1 Feature: domain Description: PRK09183 Location: 4137100-4137466 bp Feature: domain Description: PRK091 83 Location: 41 371 00-41 37466 bp Feature: gene Location: 4147112-4147954 bp Ori: QHW85804.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 4147211-4147607 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 41 4721 1 -41 47607 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4147613-4147892 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 41 4761 3-41 47892 bp Feature: gene Location: 4148140-4148857 bp Feature: domain Description: InsE Location: 4148179-4148428 bp Feature: domain Description: InsE Location: 41 481 79-41 48428 bp Feature: gene Location: 4149530-4151038 bp Ori: QHW85805.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4149788-4150520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 49788-41 50520 bp Feature: domain Description: GIIM Note: maturase Location: 4150595-4150793 bp Feature: domain Description: GIIM Note: maturase Location: 41 50595-41 50793 bp Feature: gene Location: 4151128-4151601 bp Feature: domain Description: PHA02517 Location: 4151134-4151599 bp Feature: domain Description: PHA0251 7 Location: 41 51 1 34-41 51 599 bp Feature: gene Location: 4151643-4152745 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4151652-4151904 bp Feature: domain Description: Arm-DNA-bind_3 Location: 41 51 652-41 51 904 bp Feature: gene Location: 4153200-4154132 bp Ori: QHW85091.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4153302-4153896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 53302-41 53896 bp Feature: gene Location: 4154134-4155102 bp Feature: gene Location: 4155748-4156020 bp Ori: QHW85092.1 Feature: domain Description: PRK09678 Location: 4155757-4155913 bp Feature: domain Description: PRK09678 Location: 41 55757-41 5591 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesN (COG4753), YesM (COG2972), PFLE_PFLC (TIGR02494), Peptidase_S74 (pfam13884)
APC_N_CC (pfam16689), DUF3387 (pfam11867), PRK09183 (transposase/IS protein; Provisional), CE4_Ecf1_like_5s (cd10969), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)