myRT

myRT report for GCA_010365525.1_ASM1036552v1

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Seq: CP048367.1 Escherichia coli strain 164 chromosome, complete genome (4892242 bp)
Overview 1 RT 1: 553338-558046 bp 2 RT 2: 859112-865503 bp 3 RT 3: 1554045-1560977 bp 4 RT 4: 2792558-2798525 bp 5 RT 5: 3747197-3752094 bp 6 RT 6: 4211888-4216182 bp 7 RT 7: 4225828-4234629 bp Neighborhood of RT #1 [553338, 558048] YhcG InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [859112, 865529] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Neighborhood of RT #3 [1554045, 1561012] RVT-GII PinE XerC Neighborhood of RT #4 [2792558, 2798525] Peptidase_S74 APC_N_CC InsE RVT-GII GIIM PHA02517 Neighborhood of RT #5 [3747197, 3752151] zinc_ribbon_11 InsE RVT-GII GIIM PHA02517 SH3_2 Neighborhood of RT #6 [4211888, 4216184] PHA02517 RVT-GII GIIM InsE PRK09183 Neighborhood of RT #7 [4225828, 4234736] CE4_Ecf1_like_5s CE4_Ecf1_like_5s InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 553338-554198 bp Ori: QHW86501.1 Feature: domain Description: YhcG Location: 553497-553968 bp Feature: domain Description: YhcG Location: 553497-553968 bp Feature: gene Location: 554286-555025 bp Feature: domain Description: InsE Location: 554289-554628 bp Feature: domain Description: InsE Location: 554289-554628 bp Feature: gene Location: 555698-557206 bp Ori: QHW90230.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555956-556688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555956-556688 bp Feature: domain Description: GIIM Note: maturase Location: 556763-556961 bp Feature: domain Description: GIIM Note: maturase Location: 556763-556961 bp Feature: gene Location: 557296-557769 bp Feature: domain Description: PHA02517 Location: 557302-557767 bp Feature: domain Description: PHA0251 7 Location: 557302-557767 bp Feature: gene Location: 557812-558048 bp Feature: domain Description: DUF1016_N Location: 557869-558046 bp Feature: domain Description: DUF1 01 6_N Location: 557869-558046 bp Feature: gene Location: 859112-860167 bp Ori: QHW86775.1 Feature: domain Description: YesN Location: 859115-859505 bp Feature: domain Description: YesN Location: 8591 1 5-859505 bp Feature: domain Description: YesN Location: 859847-860144 bp Feature: domain Description: YesN Location: 859847-8601 44 bp Feature: gene Location: 860184-861413 bp Ori: QHW86776.1 Feature: domain Description: YesM Location: 860664-861405 bp Feature: domain Description: YesM Location: 860664-861 405 bp Feature: gene Location: 861996-862517 bp Ori: QHW86777.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862002-862284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 862002-862284 bp Feature: domain Description: GIIM Note: maturase Location: 862332-862512 bp Feature: domain Description: GIIM Note: maturase Location: 862332-86251 2 bp Feature: gene Location: 862693-863084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863023-863083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863023-863083 bp Feature: gene Location: 863570-864475 bp Feature: gene Location: 864612-865529 bp Ori: QHW86779.1 Feature: domain Description: PFLE_PFLC Location: 864648-865503 bp Feature: domain Description: PFLE_PFLC Location: 864648-865503 bp Feature: gene Location: 1554045-1554389 bp Feature: gene Location: 1554660-1558082 bp Feature: gene Location: 1558515-1560002 bp Ori: QHW87385.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1558920-1559610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 558920-1 55961 0 bp Feature: gene Location: 1560294-1560512 bp Ori: QHW87386.1 Feature: domain Description: PinE Location: 1560297-1560504 bp Feature: domain Description: PinE Location: 1 560297-1 560504 bp Feature: gene Location: 1560590-1561012 bp Ori: QHW87387.1 Feature: domain Description: XerC Location: 1560665-1560977 bp Feature: domain Description: XerC Location: 1 560665-1 560977 bp Feature: gene Location: 2792558-2793088 bp Ori: QHW90335.1 Feature: domain Description: Peptidase_S74 Location: 2792657-2792804 bp Feature: domain Description: Peptidase_S74 Location: 2792657-2792804 bp Feature: domain Description: APC_N_CC Location: 2792957-2793080 bp Feature: domain Description: APC_N_CC Location: 2792957-2793080 bp Feature: gene Location: 2793090-2793829 bp Feature: domain Description: InsE Location: 2793093-2793432 bp Feature: domain Description: InsE Location: 2793093-2793432 bp Feature: gene Location: 2794502-2796010 bp Ori: QHW90336.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794760-2795492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794760-2795492 bp Feature: domain Description: GIIM Note: maturase Location: 2795567-2795765 bp Feature: domain Description: GIIM Note: maturase Location: 2795567-2795765 bp Feature: gene Location: 2796100-2796573 bp Feature: domain Description: PHA02517 Location: 2796106-2796571 bp Feature: domain Description: PHA0251 7 Location: 27961 06-2796571 bp Feature: gene Location: 2796615-2798525 bp Feature: gene Location: 3747197-3747622 bp Ori: QHW89262.1 Feature: domain Description: zinc_ribbon_11 Location: 3747239-3747557 bp Feature: domain Description: zinc_ribbon_1 1 Location: 3747239-3747557 bp Feature: gene Location: 3748343-3749082 bp Feature: domain Description: InsE Location: 3748346-3748685 bp Feature: domain Description: InsE Location: 3748346-3748685 bp Feature: gene Location: 3749755-3751263 bp Ori: QHW90373.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3750013-3750745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 375001 3-3750745 bp Feature: domain Description: GIIM Note: maturase Location: 3750820-3751018 bp Feature: domain Description: GIIM Note: maturase Location: 3750820-3751 01 8 bp Feature: gene Location: 3751353-3751826 bp Feature: domain Description: PHA02517 Location: 3751359-3751824 bp Feature: domain Description: PHA0251 7 Location: 3751 359-3751 824 bp Feature: gene Location: 3751902-3752151 bp Feature: domain Description: SH3_2 Location: 3751977-3752094 bp Feature: domain Description: SH3_2 Location: 3751 977-3752094 bp Feature: gene Location: 4211888-4212145 bp Feature: gene Location: 4212228-4212715 bp Feature: domain Description: PHA02517 Location: 4212231-4212402 bp Feature: domain Description: PHA0251 7 Location: 421 2231 -421 2402 bp Feature: gene Location: 4212796-4214304 bp Ori: QHW90395.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4213054-4213786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 3054-421 3786 bp Feature: domain Description: GIIM Note: maturase Location: 4213861-4214059 bp Feature: domain Description: GIIM Note: maturase Location: 421 3861 -421 4059 bp Feature: gene Location: 4214977-4215716 bp Feature: domain Description: InsE Location: 4214980-4215319 bp Feature: domain Description: InsE Location: 421 4980-421 531 9 bp Feature: gene Location: 4215795-4216184 bp Ori: QHW90396.1 Feature: domain Description: PRK09183 Location: 4215816-4216182 bp Feature: domain Description: PRK091 83 Location: 421 581 6-421 61 82 bp Feature: gene Location: 4225828-4226670 bp Ori: QHW90397.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 4225927-4226323 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 4225927-4226323 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 4226329-4226608 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 4226329-4226608 bp Feature: gene Location: 4226856-4227573 bp Feature: domain Description: InsE Location: 4226895-4227144 bp Feature: domain Description: InsE Location: 4226895-42271 44 bp Feature: gene Location: 4228246-4229754 bp Ori: QHW90398.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4228504-4229236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4228504-4229236 bp Feature: domain Description: GIIM Note: maturase Location: 4229311-4229509 bp Feature: domain Description: GIIM Note: maturase Location: 422931 1 -4229509 bp Feature: gene Location: 4229844-4230317 bp Feature: domain Description: PHA02517 Location: 4229850-4230315 bp Feature: domain Description: PHA0251 7 Location: 4229850-423031 5 bp Feature: gene Location: 4230359-4231461 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4230368-4230620 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4230368-4230620 bp Feature: gene Location: 4231916-4232848 bp Ori: QHW89669.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4232018-4232612 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 423201 8-423261 2 bp Feature: gene Location: 4232850-4233818 bp Feature: gene Location: 4234464-4234736 bp Ori: QHW89670.1 Feature: domain Description: PRK09678 Location: 4234473-4234629 bp Feature: domain Description: PRK09678 Location: 4234473-4234629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesN (COG4753), YesM (COG2972), PFLE_PFLC (TIGR02494), PinE (COG1961)
XerC (COG4973), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), zinc_ribbon_11 (pfam11682), SH3_2 (pfam07653), PRK09183 (transposase/IS protein; Provisional), CE4_Ecf1_like_5s (cd10969), Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: CP048368.1 Escherichia coli strain 164 plasmid pC-F-164_A-OXA140, complete sequence (132482 bp)
Overview 1 RT 1: 65672-69892 bp 2 RT 2: 72002-76184 bp Neighborhood of RT #1 [65672, 69892] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [72002, 76184] RVT_N RVT-GII Feature: gene Location: 65672-66094 bp Ori: QHW90482.1 Feature: domain Description: DUF1380 Location: 65675-65969 bp Feature: domain Description: DUF1380 Location: 65675-65969 bp Feature: gene Location: 66091-66282 bp Feature: gene Location: 66595-68262 bp Ori: QHW90484.1 Gene: ltrA Feature: domain Description: RVT_N Location: 66643-66880 bp Feature: domain Description: RVT_N Location: 66643-66880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66931-67573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66931-67573 bp Feature: domain Description: GIIM Note: maturase Location: 67624-67858 bp Feature: domain Description: GIIM Note: maturase Location: 6762 4-67858 bp Feature: domain Description: HNHc Note: nucleases Location: 68068-68227 bp Feature: domain Description: HNHc Note: nucleases Location: 68068-682 2 7 bp Feature: gene Location: 68897-69145 bp Feature: gene Location: 69662-69892 bp Feature: gene Location: 72002-72184 bp Feature: gene Location: 72295-73066 bp Feature: gene Location: 73319-73957 bp Ori: QHW90488.1 Feature: domain Description: RVT_N Location: 73367-73604 bp Feature: domain Description: RVT_N Location: 73367-73604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73655-73949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73655-73949 bp Feature: gene Location: 74734-74927 bp Feature: gene Location: 75615-76184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)