myRT

myRT report for GCA_010365545.1_ASM1036554v1

Download annotations/find similar RTs

Seq: CP048376.1 Escherichia coli strain 38 chromosome, complete genome (4738863 bp)
Overview 1 RT 1: 67780-71663 bp 2 RT 2: 1799866-1807020 bp Neighborhood of RT #1 [67780, 71668] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [1799866, 1807034] GMP_PMI PRK15414 RVT_N RVT-GII GIIM HNHc TagG TagH Wzt_C-like Feature: gene Location: 67780-68496 bp Ori: QHW90623.1 Gene: rph Feature: domain Description: rph Location: 67783-68491 bp Feature: domain Description: rph Location: 67783-68491 bp Feature: gene Location: 68563-69204 bp Ori: QHW90624.1 Gene: pyrE Feature: domain Description: pyrE Location: 68566-69199 bp Feature: domain Description: pyrE Location: 68566-691 99 bp Feature: gene Location: 69502-70461 bp Ori: QHW90625.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69637-70186 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 69637-701 86 bp Feature: gene Location: 70507-71103 bp Ori: QHW90626.1 Gene: slmA Feature: domain Description: slmA Location: 70513-71089 bp Feature: domain Description: slmA Location: 7051 3-71 089 bp Feature: gene Location: 71210-71668 bp Ori: QHW90627.1 Gene: dut Feature: domain Description: dut Location: 71216-71663 bp Feature: domain Description: dut Location: 71 21 6-71 663 bp Feature: gene Location: 1799866-1801281 bp Feature: domain Description: GMP_PMI Location: 1799872-1801276 bp Feature: domain Description: GMP_PMI Location: 1 799872-1 801 276 bp Feature: gene Location: 1801305-1802621 bp Ori: QHW92116.1 Gene: cpsG Feature: domain Description: PRK15414 Location: 1801308-1802613 bp Feature: domain Description: PRK1 541 4 Location: 1 801 308-1 80261 3 bp Feature: gene Location: 1803195-1804862 bp Ori: QHW92117.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1803243-1803480 bp Feature: domain Description: RVT_N Location: 1 803243-1 803480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1803531-1804173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 803531 -1 8041 73 bp Feature: domain Description: GIIM Note: maturase Location: 1804224-1804458 bp Feature: domain Description: GIIM Note: maturase Location: 1 804224-1 804458 bp Feature: domain Description: HNHc Note: nucleases Location: 1804668-1804827 bp Feature: domain Description: HNHc Note: nucleases Location: 1 804668-1 804827 bp Feature: gene Location: 1805026-1805820 bp Ori: QHW92118.1 Feature: domain Description: TagG Location: 1805047-1805815 bp Feature: domain Description: TagG Location: 1 805047-1 80581 5 bp Feature: gene Location: 1805820-1807034 bp Ori: QHW92119.1 Feature: domain Description: TagH Location: 1805829-1806558 bp Feature: domain Description: TagH Location: 1 805829-1 806558 bp Feature: domain Description: Wzt_C-like Location: 1806597-1807020 bp Feature: domain Description: Wzt_C-like Location: 1 806597-1 807020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), GMP_PMI (TIGR01479), PRK15414 (phosphomannomutase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
HNHc (smart00507), TagG (COG1682), TagH (COG1134), Wzt_C-like (cl15685)

Seq: CP048377.1 Escherichia coli strain 38 plasmid p38_A-OXA140, complete sequence (86996 bp)
Overview 1 RT 1: 48658-53558 bp Neighborhood of RT #1 [48658, 53558] DUF3560 RVT_N RVT-GII Feature: gene Location: 48658-49716 bp Feature: domain Description: DUF3560 Location: 48925-49282 bp Feature: domain Description: DUF3560 Location: 4892 5-492 82 bp Feature: gene Location: 49768-49998 bp Feature: gene Location: 51393-51974 bp Feature: domain Description: RVT_N Location: 51441-51678 bp Feature: domain Description: RVT_N Location: 51441-51678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51729-51975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5172 9-51975 bp Feature: gene Location: 52286-53055 bp Feature: gene Location: 53367-53558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3560 (pfam12083), RVT_N (pfam13655), RVT-GII