myRT

myRT report for GCA_010450855.1_ASM1045085v1

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Seq: CP048430.1 Klebsiella pneumoniae strain KP18-3-8 chromosome, complete genome (5547989 bp)
Overview 1 RT 1: 1101117-1106665 bp 2 RT 2: 1468330-1473517 bp 3 RT 3: 1542292-1547707 bp 4 RT 4: 1736442-1741549 bp 5 RT 5: 1817998-1821700 bp 6 RT 6: 2987806-2994813 bp 7 RT 7: 3011070-3017553 bp 8 RT 8: 3468491-3472086 bp 9 RT 9: 3633186-3638847 bp Neighborhood of RT #1 [1101117, 1106691] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #2 [1468330, 1473517] PRK05318 RVT-GII PRK10597 Neighborhood of RT #3 [1542292, 1547709] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [1736442, 1741551] PinE XerC RVT-GII PRK10276 umuC Neighborhood of RT #5 [1817998, 1821705] Laminin_G_3 RVT-GII PRK10597 Neighborhood of RT #6 [2987806, 2995343] DUF4917 AAA_15 RVT-Retrons STKc_PknB_like Neighborhood of RT #7 [3011070, 3017555] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #8 [3468491, 3472086] Terminase_2 PRK10276 RVT-GII Neighborhood of RT #9 [3633186, 3638924] DinI RVT-GII Phage_GPA dam Feature: gene Location: 1101117-1101680 bp Ori: QIA11310.1 Feature: domain Description: YbjK Location: 1101123-1101660 bp Feature: domain Description: YbjK Location: 1 1 01 1 23-1 1 01 660 bp Feature: gene Location: 1101803-1102783 bp Ori: QIA15493.1 Feature: domain Description: int Location: 1101806-1102733 bp Feature: domain Description: int Location: 1 1 01 806-1 1 02733 bp Feature: gene Location: 1103271-1104758 bp Ori: QIA11311.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103676-1104366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 03676-1 1 04366 bp Feature: gene Location: 1104857-1105801 bp Feature: gene Location: 1105813-1106691 bp Ori: QIA15494.1 Feature: domain Description: Phage_CI_repr Location: 1105840-1106023 bp Feature: domain Description: Phage_CI_repr Location: 1 1 05840-1 1 06023 bp Feature: domain Description: Phage_CI_repr Location: 1106152-1106344 bp Feature: domain Description: Phage_CI_repr Location: 1 1 061 52-1 1 06344 bp Feature: domain Description: Phage_CI_C Location: 1106371-1106665 bp Feature: domain Description: Phage_CI_C Location: 1 1 06371 -1 1 06665 bp Feature: gene Location: 1468330-1469043 bp Feature: gene Location: 1469217-1470578 bp Ori: QIA11652.1 Feature: domain Description: PRK05318 Location: 1469241-1470540 bp Feature: domain Description: PRK0531 8 Location: 1 469241 -1 470540 bp Feature: gene Location: 1471416-1472903 bp Ori: QIA11653.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1471821-1472511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 471 821 -1 47251 1 bp Feature: gene Location: 1472982-1473215 bp Ori: QIA11654.1 Feature: domain Description: PRK10597 Location: 1472985-1473210 bp Feature: domain Description: PRK1 0597 Location: 1 472985-1 47321 0 bp Feature: gene Location: 1473227-1473517 bp Feature: gene Location: 1542292-1543428 bp Ori: QIA15523.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1542472-1543375 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 542472-1 543375 bp Feature: gene Location: 1543599-1543841 bp Ori: QIA11724.1 Feature: domain Description: DinI Location: 1543650-1543830 bp Feature: domain Description: DinI Location: 1 543650-1 543830 bp Feature: gene Location: 1544456-1545943 bp Ori: QIA11725.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1544861-1545551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 544861 -1 545551 bp Feature: gene Location: 1546022-1546441 bp Ori: QIA11726.1 Gene: umuD Feature: domain Description: PRK10276 Location: 1546025-1546436 bp Feature: domain Description: PRK1 0276 Location: 1 546025-1 546436 bp Feature: gene Location: 1546444-1547709 bp Ori: QIA11727.1 Feature: domain Description: umuC Location: 1546447-1547707 bp Feature: domain Description: umuC Location: 1 546447-1 547707 bp Feature: gene Location: 1736442-1736903 bp Feature: domain Description: PinE Location: 1736445-1736895 bp Feature: domain Description: PinE Location: 1 736445-1 736895 bp Feature: gene Location: 1736981-1737403 bp Ori: QIA11923.1 Feature: domain Description: XerC Location: 1737017-1737362 bp Feature: domain Description: XerC Location: 1 73701 7-1 737362 bp Feature: gene Location: 1738298-1739785 bp Ori: QIA11924.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738703-1739393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 738703-1 739393 bp Feature: gene Location: 1739865-1740284 bp Ori: QIA15533.1 Gene: umuD Feature: domain Description: PRK10276 Location: 1739868-1740279 bp Feature: domain Description: PRK1 0276 Location: 1 739868-1 740279 bp Feature: gene Location: 1740286-1741551 bp Ori: QIA11925.1 Feature: domain Description: umuC Location: 1740289-1741549 bp Feature: domain Description: umuC Location: 1 740289-1 741 549 bp Feature: gene Location: 1817998-1818729 bp Ori: QIA12008.1 Feature: domain Description: Laminin_G_3 Location: 1818334-1818673 bp Feature: domain Description: Laminin_G_3 Location: 1 81 8334-1 81 8673 bp Feature: gene Location: 1818726-1818935 bp Feature: gene Location: 1819385-1820872 bp Ori: QIA12010.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1819790-1820480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 9790-1 820480 bp Feature: gene Location: 1820950-1821234 bp Feature: gene Location: 1821457-1821705 bp Ori: QIA12012.1 Feature: domain Description: PRK10597 Location: 1821460-1821700 bp Feature: domain Description: PRK1 0597 Location: 1 821 460-1 821 700 bp Feature: gene Location: 2987806-2988825 bp Ori: QIA13076.1 Feature: domain Description: DUF4917 Location: 2987866-2988790 bp Feature: domain Description: DUF491 7 Location: 2987866-2988790 bp Feature: gene Location: 2990220-2992466 bp Ori: QIA13077.1 Feature: domain Description: AAA_15 Location: 2990223-2991231 bp Feature: domain Description: AAA_1 5 Location: 2990223-2991 231 bp Feature: gene Location: 2992581-2993681 bp Ori: QIA13078.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2992764-2993292 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2992764-2993292 bp Feature: gene Location: 2994012-2994086 bp Feature: gene Location: 2994240-2995343 bp Ori: QIA13079.1 Feature: domain Description: STKc_PknB_like Location: 2994372-2994813 bp Feature: domain Description: STKc_PknB_like Location: 2994372-299481 3 bp Feature: gene Location: 3011070-3012128 bp Ori: QIA13096.1 Feature: domain Description: YccC Location: 3011076-3012114 bp Feature: domain Description: YccC Location: 301 1 076-301 21 1 4 bp Feature: gene Location: 3012227-3012700 bp Ori: QIA13097.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 3012230-3012689 bp Feature: domain Description: PRK1 001 6 Location: 301 2230-301 2689 bp Feature: gene Location: 3012782-3014269 bp Ori: QIA13098.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3013187-3013877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 301 31 87-301 3877 bp Feature: gene Location: 3014787-3015950 bp Ori: QIA13099.1 Gene: dacD Feature: domain Description: dacD Location: 3014790-3015945 bp Feature: domain Description: dacD Location: 301 4790-301 5945 bp Feature: gene Location: 3016131-3017555 bp Ori: QIA13100.1 Gene: sbcB Feature: domain Description: SbcB Location: 3016137-3017553 bp Feature: domain Description: SbcB Location: 301 61 37-301 7553 bp Feature: gene Location: 3468491-3469075 bp Ori: QIA13484.1 Feature: domain Description: Terminase_2 Location: 3468536-3469001 bp Feature: domain Description: Terminase_2 Location: 3468536-3469001 bp Feature: gene Location: 3469133-3469462 bp Ori: QIA13485.1 Feature: domain Description: PRK10276 Location: 3469139-3469280 bp Feature: domain Description: PRK1 0276 Location: 34691 39-3469280 bp Feature: gene Location: 3469866-3471353 bp Ori: QIA13486.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3470271-3470961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3470271 -3470961 bp Feature: gene Location: 3471450-3471788 bp Feature: gene Location: 3471781-3472086 bp Feature: gene Location: 3633186-3633419 bp Ori: QIA13645.1 Feature: domain Description: DinI Location: 3633231-3633414 bp Feature: domain Description: DinI Location: 3633231 -363341 4 bp Feature: gene Location: 3633431-3633619 bp Feature: gene Location: 3633727-3635214 bp Ori: QIA13647.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634132-3634822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36341 32-3634822 bp Feature: gene Location: 3635692-3638076 bp Ori: QIA13648.1 Feature: domain Description: Phage_GPA Location: 3636256-3637222 bp Feature: domain Description: Phage_GPA Location: 3636256-3637222 bp Feature: gene Location: 3638073-3638924 bp Ori: QIA13649.1 Feature: domain Description: dam Location: 3638076-3638847 bp Feature: domain Description: dam Location: 3638076-3638847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjK (COG3226), int (PHA02601), RVT-GII, Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)
umuC (PRK03609), PinE (COG1961), XerC (COG4973), Laminin_G_3 (pfam13385), DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, STKc_PknB_like (cd14014), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC)
dacD (PRK11397), SbcB (COG2925), Terminase_2 (pfam03592), Phage_GPA (pfam05840), dam (TIGR00571)