myRT

myRT report for GCA_010508875.1_ASM1050887v1

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Seq: CP048436.1 Flavonifractor plautii strain JCM 32125 chromosome, complete genome (3985392 bp)
Overview 1 RT 1: 155329-160477 bp 2 RT 2: 702814-712351 bp 3 RT 3: 900826-905303 bp 4 RT 4: 1705518-1714456 bp 5 RT 5: 1755893-1763110 bp 6 RT 6: 2132442-2148716 bp 7 RT 7: 2162158-2171340 bp 8 RT 8: 2724498-2736755 bp 9 RT 9: 3052800-3068628 bp Neighborhood of RT #1 [155329, 160477] ALDH_Acyl-CoA-Red_LuxC PRK08279 FACL_like_6 RVT-Retrons AIM24 Neighborhood of RT #2 [702814, 712359] RVT-GII SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA DUF3852 Neighborhood of RT #3 [900826, 905303] COG1878 PRK08268 RVT-GII Intron_maturas2 PRK06130 Neighborhood of RT #4 [1705518, 1714521] SLH SLH RVT-GII SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SSB_OBF Neighborhood of RT #5 [1755893, 1763223] PrgI VirB4_CagE VirB4_CagE RVT-GII Intron_maturas2 TraC-F-type Spr Neighborhood of RT #6 [2132442, 2148745] Spr RVT-GII Intron_maturas2 VirB4_CagE TraC-F-type PrgI Maff2 RVT-GII Intron_maturas2 HNHc VirD4 RVT-GII VirD4 YpsA Neighborhood of RT #7 [2162158, 2171351] SSB_OBF TED SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA RVT-GII Sortase_D_2 Neighborhood of RT #8 [2724498, 2736757] Spr RVT-GII Intron_maturas2 VirB4_CagE PrgI LPD26 RVT-GII Intron_maturas2 HNHc Maff2 Neighborhood of RT #9 [3052800, 3068628] DnaG DUF3991 Toprim_2 AAA_25 T4SS-DNA_transf T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc VirD4 TrbC PrgI VirB4_CagE VirB4_CagE RVT-GII Intron_maturas2 RVT-GII Intron_maturas2 Feature: gene Location: 155329-156519 bp Ori: QIA29186.1 Feature: domain Description: ALDH_Acyl-CoA-Red_LuxC Location: 155551-156505 bp Feature: domain Description: ALDH_Acyl-CoA-Red_LuxC Location: 1 55551 -1 56505 bp Feature: gene Location: 156529-157962 bp Ori: QIA29187.1 Feature: domain Description: PRK08279 Location: 156556-156817 bp Feature: domain Description: PRK08279 Location: 1 56556-1 5681 7 bp Feature: domain Description: FACL_like_6 Location: 156901-157951 bp Feature: domain Description: FACL_like_6 Location: 1 56901 -1 57951 bp Feature: gene Location: 158255-159178 bp Ori: QIA29188.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 158369-158915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 58369-1 5891 5 bp Feature: gene Location: 159364-160137 bp Ori: QIA29189.1 Feature: domain Description: AIM24 Location: 159517-160117 bp Feature: domain Description: AIM24 Location: 1 5951 7-1 601 1 7 bp Feature: gene Location: 160247-160477 bp Feature: gene Location: 702814-703632 bp Feature: gene Location: 703743-704000 bp Feature: gene Location: 704721-706553 bp Ori: QIA29663.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704985-705690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 704985-705690 bp Feature: gene Location: 706667-711949 bp Feature: domain Description: SpaA Location: 707516-707711 bp Feature: domain Description: SpaA Location: 70751 6-70771 1 bp Feature: domain Description: SpaA Location: 707786-707978 bp Feature: domain Description: SpaA Location: 707786-707978 bp Feature: domain Description: SpaA Location: 708056-708248 bp Feature: domain Description: SpaA Location: 708056-708248 bp Feature: domain Description: SpaA Location: 708329-708521 bp Feature: domain Description: SpaA Location: 708329-708521 bp Feature: domain Description: SpaA Location: 708590-708761 bp Feature: domain Description: SpaA Location: 708590-708761 bp Feature: domain Description: SpaA Location: 708860-709046 bp Feature: domain Description: SpaA Location: 708860-709046 bp Feature: domain Description: SpaA Location: 709127-709313 bp Feature: domain Description: SpaA Location: 7091 27-70931 3 bp Feature: domain Description: SpaA Location: 709418-709607 bp Feature: domain Description: SpaA Location: 70941 8-709607 bp Feature: domain Description: SpaA Location: 709718-709922 bp Feature: domain Description: SpaA Location: 70971 8-709922 bp Feature: domain Description: SpaA Location: 709997-710231 bp Feature: domain Description: SpaA Location: 709997-71 0231 bp Feature: domain Description: SpaA Location: 710309-710519 bp Feature: domain Description: SpaA Location: 71 0309-71 051 9 bp Feature: domain Description: SpaA Location: 710612-710801 bp Feature: domain Description: SpaA Location: 71 061 2-71 0801 bp Feature: domain Description: SpaA Location: 710876-711062 bp Feature: domain Description: SpaA Location: 71 0876-71 1 062 bp Feature: domain Description: SpaA Location: 711170-711362 bp Feature: domain Description: SpaA Location: 71 1 1 70-71 1 362 bp Feature: gene Location: 712018-712359 bp Ori: QIA29664.1 Feature: domain Description: DUF3852 Location: 712033-712351 bp Feature: domain Description: DUF3852 Location: 71 2033-71 2351 bp Feature: gene Location: 900826-901644 bp Ori: QIA29808.1 Feature: domain Description: COG1878 Location: 900844-901588 bp Feature: domain Description: COG1 878 Location: 900844-901 588 bp Feature: gene Location: 901680-901775 bp Ori: QIA29809.1 Feature: domain Description: PRK08268 Location: 901686-901770 bp Feature: domain Description: PRK08268 Location: 901 686-901 770 bp Feature: gene Location: 901876-903687 bp Ori: QIA29810.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 902140-902974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9021 40-902974 bp Feature: domain Description: Intron_maturas2 Location: 903043-903352 bp Feature: domain Description: Intron_maturas2 Location: 903043-903352 bp Feature: gene Location: 904275-905132 bp Feature: domain Description: PRK06130 Location: 904338-905121 bp Feature: domain Description: PRK061 30 Location: 904338-9051 21 bp Feature: gene Location: 905137-905303 bp Feature: gene Location: 1705518-1706099 bp Ori: QIA30542.1 Feature: domain Description: SLH Location: 1705632-1705716 bp Feature: domain Description: SLH Location: 1 705632-1 70571 6 bp Feature: domain Description: SLH Location: 1705800-1705905 bp Feature: domain Description: SLH Location: 1 705800-1 705905 bp Feature: gene Location: 1706181-1706441 bp Feature: gene Location: 1707162-1708994 bp Ori: QIA30544.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1707426-1708131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 707426-1 7081 31 bp Feature: gene Location: 1709189-1714054 bp Ori: QIA30545.1 Feature: domain Description: SpaA Location: 1709933-1710104 bp Feature: domain Description: SpaA Location: 1 709933-1 71 01 04 bp Feature: domain Description: SpaA Location: 1710197-1710368 bp Feature: domain Description: SpaA Location: 1 71 01 97-1 71 0368 bp Feature: domain Description: SpaA Location: 1710482-1710662 bp Feature: domain Description: SpaA Location: 1 71 0482-1 71 0662 bp Feature: domain Description: SpaA Location: 1710743-1710926 bp Feature: domain Description: SpaA Location: 1 71 0743-1 71 0926 bp Feature: domain Description: SpaA Location: 1711004-1711193 bp Feature: domain Description: SpaA Location: 1 71 1 004-1 71 1 1 93 bp Feature: domain Description: SpaA Location: 1711274-1711460 bp Feature: domain Description: SpaA Location: 1 71 1 274-1 71 1 460 bp Feature: domain Description: SpaA Location: 1711541-1711742 bp Feature: domain Description: SpaA Location: 1 71 1 541 -1 71 1 742 bp Feature: domain Description: SpaA Location: 1711844-1712057 bp Feature: domain Description: SpaA Location: 1 71 1 844-1 71 2057 bp Feature: domain Description: SpaA Location: 1712138-1712345 bp Feature: domain Description: SpaA Location: 1 71 21 38-1 71 2345 bp Feature: domain Description: SpaA Location: 1712420-1712621 bp Feature: domain Description: SpaA Location: 1 71 2420-1 71 2621 bp Feature: domain Description: SpaA Location: 1712723-1712915 bp Feature: domain Description: SpaA Location: 1 71 2723-1 71 291 5 bp Feature: domain Description: SpaA Location: 1712990-1713176 bp Feature: domain Description: SpaA Location: 1 71 2990-1 71 31 76 bp Feature: domain Description: SpaA Location: 1713284-1713458 bp Feature: domain Description: SpaA Location: 1 71 3284-1 71 3458 bp Feature: gene Location: 1714150-1714521 bp Ori: QIA30546.1 Feature: domain Description: SSB_OBF Location: 1714162-1714456 bp Feature: domain Description: SSB_OBF Location: 1 71 41 62-1 71 4456 bp Feature: gene Location: 1755893-1756243 bp Ori: QIA32697.1 Feature: domain Description: PrgI Location: 1755905-1756175 bp Feature: domain Description: PrgI Location: 1 755905-1 7561 75 bp Feature: gene Location: 1756236-1758227 bp Ori: QIA30594.1 Feature: domain Description: VirB4_CagE Location: 1756296-1756755 bp Feature: domain Description: VirB4_CagE Location: 1 756296-1 756755 bp Feature: domain Description: VirB4_CagE Location: 1756917-1758201 bp Feature: domain Description: VirB4_CagE Location: 1 75691 7-1 758201 bp Feature: gene Location: 1758794-1760605 bp Ori: QIA30595.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1759058-1759892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 759058-1 759892 bp Feature: domain Description: Intron_maturas2 Location: 1759961-1760270 bp Feature: domain Description: Intron_maturas2 Location: 1 759961 -1 760270 bp Feature: gene Location: 1760715-1761083 bp Ori: QIA30596.1 Feature: domain Description: TraC-F-type Location: 1760730-1760961 bp Feature: domain Description: TraC-F-type Location: 1 760730-1 760961 bp Feature: gene Location: 1761997-1763223 bp Ori: QIA30597.1 Feature: domain Description: Spr Location: 1762777-1763110 bp Feature: domain Description: Spr Location: 1 762777-1 7631 1 0 bp Feature: gene Location: 2132442-2133644 bp Ori: QIA32713.1 Feature: domain Description: Spr Location: 2133129-2133522 bp Feature: domain Description: Spr Location: 21 331 29-21 33522 bp Feature: gene Location: 2134608-2134841 bp Feature: gene Location: 2134989-2136779 bp Ori: QIA30931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2135256-2136069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 35256-21 36069 bp Feature: domain Description: Intron_maturas2 Location: 2136153-2136450 bp Feature: domain Description: Intron_maturas2 Location: 21 361 53-21 36450 bp Feature: gene Location: 2137273-2139435 bp Ori: QIA30932.1 Feature: domain Description: VirB4_CagE Location: 2137360-2137813 bp Feature: domain Description: VirB4_CagE Location: 21 37360-21 3781 3 bp Feature: domain Description: TraC-F-type Location: 2138080-2139397 bp Feature: domain Description: TraC-F-type Location: 21 38080-21 39397 bp Feature: gene Location: 2139380-2139847 bp Ori: QIA30933.1 Feature: domain Description: PrgI Location: 2139395-2139668 bp Feature: domain Description: PrgI Location: 21 39395-21 39668 bp Feature: gene Location: 2140800-2141018 bp Ori: QIA30935.1 Feature: domain Description: Maff2 Location: 2140803-2141010 bp Feature: domain Description: Maff2 Location: 21 40803-21 41 01 0 bp Feature: gene Location: 2141231-2141536 bp Feature: gene Location: 2141656-2143455 bp Ori: QIA32714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2141923-2142739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 41 923-21 42739 bp Feature: domain Description: Intron_maturas2 Location: 2142817-2143114 bp Feature: domain Description: Intron_maturas2 Location: 21 4281 7-21 431 1 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2143276-2143435 bp Feature: domain Description: HNHc Note: nucleases Location: 21 43276-21 43435 bp Feature: gene Location: 2143995-2144756 bp Feature: domain Description: VirD4 Location: 2144004-2144727 bp Feature: domain Description: VirD4 Location: 21 44004-21 44727 bp Feature: gene Location: 2144892-2146799 bp Ori: QIA30936.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2145225-2145969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 45225-21 45969 bp Feature: gene Location: 2147432-2148133 bp Ori: QIA32715.1 Feature: domain Description: VirD4 Location: 2147609-2148089 bp Feature: domain Description: VirD4 Location: 21 47609-21 48089 bp Feature: gene Location: 2148257-2148745 bp Ori: QIA30937.1 Feature: domain Description: YpsA Location: 2148290-2148716 bp Feature: domain Description: YpsA Location: 21 48290-21 4871 6 bp Feature: gene Location: 2162158-2162529 bp Ori: QIA30956.1 Feature: domain Description: SSB_OBF Location: 2162170-2162461 bp Feature: domain Description: SSB_OBF Location: 21 621 70-21 62461 bp Feature: gene Location: 2162611-2167497 bp Ori: QIA32718.1 Feature: domain Description: TED Location: 2162626-2162752 bp Feature: domain Description: TED Location: 21 62626-21 62752 bp Feature: domain Description: SpaA Location: 2163388-2163553 bp Feature: domain Description: SpaA Location: 21 63388-21 63553 bp Feature: domain Description: SpaA Location: 2163649-2163808 bp Feature: domain Description: SpaA Location: 21 63649-21 63808 bp Feature: domain Description: SpaA Location: 2163937-2164114 bp Feature: domain Description: SpaA Location: 21 63937-21 641 1 4 bp Feature: domain Description: SpaA Location: 2164198-2164363 bp Feature: domain Description: SpaA Location: 21 641 98-21 64363 bp Feature: domain Description: SpaA Location: 2164456-2164645 bp Feature: domain Description: SpaA Location: 21 64456-21 64645 bp Feature: domain Description: SpaA Location: 2164723-2164912 bp Feature: domain Description: SpaA Location: 21 64723-21 6491 2 bp Feature: domain Description: SpaA Location: 2164993-2165191 bp Feature: domain Description: SpaA Location: 21 64993-21 651 91 bp Feature: domain Description: SpaA Location: 2165284-2165497 bp Feature: domain Description: SpaA Location: 21 65284-21 65497 bp Feature: domain Description: SpaA Location: 2165578-2165785 bp Feature: domain Description: SpaA Location: 21 65578-21 65785 bp Feature: domain Description: SpaA Location: 2165860-2166076 bp Feature: domain Description: SpaA Location: 21 65860-21 66076 bp Feature: domain Description: SpaA Location: 2166160-2166355 bp Feature: domain Description: SpaA Location: 21 661 60-21 66355 bp Feature: domain Description: SpaA Location: 2166427-2166616 bp Feature: domain Description: SpaA Location: 21 66427-21 6661 6 bp Feature: domain Description: SpaA Location: 2166727-2166901 bp Feature: domain Description: SpaA Location: 21 66727-21 66901 bp Feature: gene Location: 2167662-2169494 bp Ori: QIA30957.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2167926-2168631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 67926-21 68631 bp Feature: gene Location: 2170215-2170472 bp Feature: gene Location: 2170617-2171351 bp Ori: QIA30959.1 Feature: domain Description: Sortase_D_2 Location: 2170980-2171340 bp Feature: domain Description: Sortase_D_2 Location: 21 70980-21 71 340 bp Feature: gene Location: 2724498-2726315 bp Ori: QIA31510.1 Feature: domain Description: Spr Location: 2725971-2726292 bp Feature: domain Description: Spr Location: 2725971 -2726292 bp Feature: gene Location: 2726296-2726571 bp Feature: gene Location: 2726689-2728479 bp Ori: QIA31511.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2726956-2727769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2726956-2727769 bp Feature: domain Description: Intron_maturas2 Location: 2727853-2728150 bp Feature: domain Description: Intron_maturas2 Location: 2727853-27281 50 bp Feature: gene Location: 2728973-2731096 bp Ori: QIA31512.1 Feature: domain Description: VirB4_CagE Location: 2729717-2731058 bp Feature: domain Description: VirB4_CagE Location: 272971 7-2731 058 bp Feature: gene Location: 2731050-2731445 bp Ori: QIA32747.1 Feature: domain Description: PrgI Location: 2731065-2731338 bp Feature: domain Description: PrgI Location: 2731 065-2731 338 bp Feature: gene Location: 2732813-2733064 bp Ori: QIA31515.1 Feature: domain Description: LPD26 Location: 2732840-2732912 bp Feature: domain Description: LPD26 Location: 2732840-273291 2 bp Feature: gene Location: 2733079-2733369 bp Feature: gene Location: 2733457-2735289 bp Ori: QIA31516.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2733721-2734552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2733721 -2734552 bp Feature: domain Description: Intron_maturas2 Location: 2734624-2734939 bp Feature: domain Description: Intron_maturas2 Location: 2734624-2734939 bp Feature: domain Description: HNHc Note: nucleases Location: 2735086-2735260 bp Feature: domain Description: HNHc Note: nucleases Location: 2735086-2735260 bp Feature: gene Location: 2735865-2736533 bp Feature: gene Location: 2736545-2736757 bp Ori: QIA31518.1 Feature: domain Description: Maff2 Location: 2736548-2736755 bp Feature: domain Description: Maff2 Location: 2736548-2736755 bp Feature: gene Location: 3052800-3054701 bp Ori: QIA31784.1 Feature: domain Description: DnaG Location: 3052959-3053052 bp Feature: domain Description: DnaG Location: 3052959-3053052 bp Feature: domain Description: DUF3991 Location: 3053142-3053349 bp Feature: domain Description: DUF3991 Location: 30531 42-3053349 bp Feature: domain Description: Toprim_2 Location: 3053373-3053640 bp Feature: domain Description: Toprim_2 Location: 3053373-3053640 bp Feature: domain Description: AAA_25 Location: 3053724-3054234 bp Feature: domain Description: AAA_25 Location: 3053724-3054234 bp Feature: gene Location: 3054787-3056067 bp Feature: domain Description: T4SS-DNA_transf Location: 3054919-3055051 bp Feature: domain Description: T4SS-DNA_transf Location: 305491 9-3055051 bp Feature: domain Description: T4SS-DNA_transf Location: 3055186-3056062 bp Feature: domain Description: T4SS-DNA_transf Location: 30551 86-3056062 bp Feature: gene Location: 3056643-3058442 bp Ori: QIA32767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3056910-3057726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305691 0-3057726 bp Feature: domain Description: Intron_maturas2 Location: 3057804-3058101 bp Feature: domain Description: Intron_maturas2 Location: 3057804-30581 01 bp Feature: domain Description: HNHc Note: nucleases Location: 3058263-3058422 bp Feature: domain Description: HNHc Note: nucleases Location: 3058263-3058422 bp Feature: gene Location: 3058562-3058879 bp Feature: domain Description: VirD4 Location: 3058580-3058760 bp Feature: domain Description: VirD4 Location: 3058580-3058760 bp Feature: gene Location: 3058876-3059202 bp Ori: QIA31785.1 Feature: domain Description: TrbC Location: 3058915-3059167 bp Feature: domain Description: TrbC Location: 305891 5-30591 67 bp Feature: gene Location: 3060625-3060975 bp Ori: QIA32768.1 Feature: domain Description: PrgI Location: 3060637-3060907 bp Feature: domain Description: PrgI Location: 3060637-3060907 bp Feature: gene Location: 3060968-3062959 bp Ori: QIA31788.1 Feature: domain Description: VirB4_CagE Location: 3061028-3061487 bp Feature: domain Description: VirB4_CagE Location: 3061 028-3061 487 bp Feature: domain Description: VirB4_CagE Location: 3061649-3062933 bp Feature: domain Description: VirB4_CagE Location: 3061 649-3062933 bp Feature: gene Location: 3063526-3065337 bp Ori: QIA31789.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3063790-3064624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3063790-3064624 bp Feature: domain Description: Intron_maturas2 Location: 3064693-3065002 bp Feature: domain Description: Intron_maturas2 Location: 3064693-3065002 bp Feature: gene Location: 3066078-3067868 bp Ori: QIA31790.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3066345-3067158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3066345-30671 58 bp Feature: domain Description: Intron_maturas2 Location: 3067242-3067539 bp Feature: domain Description: Intron_maturas2 Location: 3067242-3067539 bp Feature: gene Location: 3067986-3068279 bp Feature: gene Location: 3068260-3068628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_Acyl-CoA-Red_LuxC (cd07080), PRK08279 (long-chain-acyl-CoA synthetase; Validated), FACL_like_6 (cd05922), RVT-Retrons, AIM24 (pfam01987), RVT-GII, SpaA (pfam17802), DUF3852 (pfam12963), COG1878 (Kynurenine formamidase ), PRK08268 (3-hydroxy-acyl-CoA dehydrogenase; Validated)
Intron_maturas2 (pfam01348), PRK06130 (3-hydroxybutyryl-CoA dehydrogenase; Validated), SLH (pfam00395), SSB_OBF (cd04496), PrgI (pfam12666), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746), Spr (COG0791), Maff2 (pfam12750), HNHc (smart00507)
VirD4 (COG3505), YpsA, TED (pfam08341), Sortase_D_2 (cd06166), LPD26 (pfam18842), DnaG (COG0358), DUF3991 (pfam13154), Toprim_2 (pfam13155), AAA_25 (pfam13481), T4SS-DNA_transf (pfam02534)
TrbC (pfam04956)