myRT

myRT report for GCA_010509575.1_ASM1050957v1

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Seq: CP048437.1 Faecalibacterium prausnitzii A2-165 strain JCM 31915 chromosome, complete genome (3102523 bp)
Overview 1 RT 1: 1009695-1013509 bp 2 RT 2: 1344212-1348192 bp 3 RT 3: 1376933-1381864 bp 4 RT 4: 1774592-1778620 bp 5 RT 5: 1894227-1898386 bp 6 RT 6: 2128490-2133787 bp 7 RT 7: 2583247-2589557 bp Neighborhood of RT #1 [1009695, 1013509] pfam03781 Avd_like RVT-DGRs Neighborhood of RT #2 [1344212, 1348197] PrgI RVT-GII Intron_maturas2 HNHc Maff2 Neighborhood of RT #3 [1376933, 1382625] CxxCG_CxxCG_HTH GepA RVT-UG2 HTH_XRE Eco57I Neighborhood of RT #4 [1774592, 1778757] Maff2 RVT-GII Intron_maturas2 HNHc TrbL PrgI Neighborhood of RT #5 [1894227, 1898445] Avd_like RVT-DGRs bZIP_2 Neighborhood of RT #6 [2128490, 2133795] T4SS-DNA_transf Maff2 RVT-GII HNHc YozG TnpV Neighborhood of RT #7 [2583247, 2589694] Cyt_C5_DNA_methylase TraC-F-type RVT-GII HNHc PrgI Feature: gene Location: 1009695-1010792 bp Ori: QIA42449.1 Feature: domain Description: pfam03781 Location: 1009935-1010253 bp Feature: domain Description: pfam03781 Location: 1 009935-1 01 0253 bp Feature: gene Location: 1010864-1011208 bp Ori: QIA42450.1 Gene: avd Feature: domain Description: Avd_like Location: 1010888-1011200 bp Feature: domain Description: Avd_like Location: 1 01 0888-1 01 1 200 bp Feature: gene Location: 1011468-1012781 bp Ori: QIA42451.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1011849-1012515 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 01 1 849-1 01 251 5 bp Feature: gene Location: 1012760-1013116 bp Feature: gene Location: 1013129-1013509 bp Feature: gene Location: 1344212-1344616 bp Ori: QIA42740.1 Feature: domain Description: PrgI Location: 1344227-1344500 bp Feature: domain Description: PrgI Location: 1 344227-1 344500 bp Feature: gene Location: 1344638-1344940 bp Feature: gene Location: 1345016-1346848 bp Ori: QIA42742.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1345280-1346111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 345280-1 3461 1 1 bp Feature: domain Description: Intron_maturas2 Location: 1346183-1346498 bp Feature: domain Description: Intron_maturas2 Location: 1 3461 83-1 346498 bp Feature: domain Description: HNHc Note: nucleases Location: 1346645-1346819 bp Feature: domain Description: HNHc Note: nucleases Location: 1 346645-1 34681 9 bp Feature: gene Location: 1347424-1348095 bp Feature: gene Location: 1348114-1348197 bp Feature: domain Description: Maff2 Location: 1348117-1348192 bp Feature: domain Description: Maff2 Location: 1 3481 1 7-1 3481 92 bp Feature: gene Location: 1376933-1377319 bp Feature: gene Location: 1377347-1378342 bp Ori: QIA42778.1 Feature: domain Description: CxxCG_CxxCG_HTH Location: 1377371-1377746 bp Feature: domain Description: CxxCG_CxxCG_HTH Location: 1 377371 -1 377746 bp Feature: domain Description: GepA Location: 1377884-1378271 bp Feature: domain Description: GepA Location: 1 377884-1 378271 bp Feature: gene Location: 1378714-1380054 bp Ori: QIA42779.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1378936-1379767 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 378936-1 379767 bp Feature: gene Location: 1380113-1380415 bp Ori: QIA42780.1 Feature: domain Description: HTH_XRE Location: 1380122-1380293 bp Feature: domain Description: HTH_XRE Location: 1 3801 22-1 380293 bp Feature: gene Location: 1380715-1382625 bp Ori: QIA42781.1 Feature: domain Description: Eco57I Location: 1381573-1381864 bp Feature: domain Description: Eco57I Location: 1 381 573-1 381 864 bp Feature: gene Location: 1774592-1774756 bp Feature: domain Description: Maff2 Location: 1774661-1774751 bp Feature: domain Description: Maff2 Location: 1 774661 -1 774751 bp Feature: gene Location: 1774860-1775525 bp Feature: gene Location: 1776101-1777933 bp Ori: QIA43140.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1776365-1777196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 776365-1 7771 96 bp Feature: domain Description: Intron_maturas2 Location: 1777268-1777583 bp Feature: domain Description: Intron_maturas2 Location: 1 777268-1 777583 bp Feature: domain Description: HNHc Note: nucleases Location: 1777730-1777904 bp Feature: domain Description: HNHc Note: nucleases Location: 1 777730-1 777904 bp Feature: gene Location: 1778009-1778311 bp Ori: QIA43141.1 Feature: domain Description: TrbL Location: 1778033-1778270 bp Feature: domain Description: TrbL Location: 1 778033-1 778270 bp Feature: gene Location: 1778332-1778757 bp Ori: QIA43142.1 Feature: domain Description: PrgI Location: 1778350-1778620 bp Feature: domain Description: PrgI Location: 1 778350-1 778620 bp Feature: gene Location: 1894227-1894544 bp Feature: gene Location: 1894510-1894869 bp Ori: QIA43235.1 Feature: domain Description: Avd_like Location: 1894561-1894846 bp Feature: domain Description: Avd_like Location: 1 894561 -1 894846 bp Feature: gene Location: 1895228-1896481 bp Ori: QIA43236.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1895528-1896173 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 895528-1 8961 73 bp Feature: gene Location: 1896525-1898249 bp Feature: gene Location: 1898254-1898445 bp Ori: QIA44361.1 Feature: domain Description: bZIP_2 Location: 1898299-1898386 bp Feature: domain Description: bZIP_2 Location: 1 898299-1 898386 bp Feature: gene Location: 2128490-2129968 bp Feature: domain Description: T4SS-DNA_transf Location: 2128613-2129816 bp Feature: domain Description: T4SS-DNA_transf Location: 21 2861 3-21 2981 6 bp Feature: gene Location: 2130109-2130240 bp Ori: QIA43408.1 Feature: domain Description: Maff2 Location: 2130112-2130235 bp Feature: domain Description: Maff2 Location: 21 301 1 2-21 30235 bp Feature: gene Location: 2130961-2132832 bp Ori: QIA43409.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2131282-2132020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 31 282-21 32020 bp Feature: domain Description: HNHc Note: nucleases Location: 2132557-2132719 bp Feature: domain Description: HNHc Note: nucleases Location: 21 32557-21 3271 9 bp Feature: gene Location: 2133186-2133458 bp Ori: QIA43410.1 Feature: domain Description: YozG Location: 2133195-2133396 bp Feature: domain Description: YozG Location: 21 331 95-21 33396 bp Feature: gene Location: 2133418-2133795 bp Ori: QIA43411.1 Feature: domain Description: TnpV Location: 2133463-2133787 bp Feature: domain Description: TnpV Location: 21 33463-21 33787 bp Feature: gene Location: 2583247-2584140 bp Ori: QIA43792.1 Gene: dcm Feature: domain Description: Cyt_C5_DNA_methylase Location: 2583262-2583745 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 2583262-2583745 bp Feature: gene Location: 2584137-2585579 bp Feature: domain Description: TraC-F-type Location: 2584170-2585448 bp Feature: domain Description: TraC-F-type Location: 25841 70-2585448 bp Feature: gene Location: 2585661-2587634 bp Ori: QIA43793.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2585997-2586735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2585997-2586735 bp Feature: domain Description: HNHc Note: nucleases Location: 2587284-2587455 bp Feature: domain Description: HNHc Note: nucleases Location: 2587284-2587455 bp Feature: gene Location: 2588320-2589342 bp Feature: gene Location: 2589269-2589694 bp Ori: QIA43794.1 Feature: domain Description: PrgI Location: 2589287-2589557 bp Feature: domain Description: PrgI Location: 2589287-2589557 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, PrgI (pfam12666), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Maff2 (pfam12750), CxxCG_CxxCG_HTH (TIGR03830), GepA (COG3600)
RVT-UG2, HTH_XRE (smart00530), Eco57I (pfam07669), TrbL (pfam04610), bZIP_2 (pfam07716), T4SS-DNA_transf (pfam02534), YozG (COG3655), TnpV (pfam14198), Cyt_C5_DNA_methylase (cl30459), TraC-F-type (TIGR02746)