myRT

myRT report for GCA_010728155.1_ASM1072815v1

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Seq: AP022605.1 Mycolicibacterium doricum JCM 12405 DNA, nearly complete genome (4029398 bp)
Overview 1 RT 1: 1141604-1146185 bp 2 RT 2: 1693756-1699025 bp 3 RT 3: 2993583-3001034 bp 4 RT 4: 3779957-3787262 bp 5 RT 5: 3824546-3829931 bp Neighborhood of RT #1 [1141604, 1146361] UvrA MhpC RVT-GII GIIM DDE_Tnp_1_4 HTH_Hin_like Neighborhood of RT #2 [1693756, 1699048] SUF_scaf_2 PaaD RVT-GII RVT-GII GIIM FAD_binding_3 OYE_like_5_FMN Neighborhood of RT #3 [2993583, 3001034] RVT-GII GIIM RVT-GII PinE RVT-GII RVT-GII PRK08326 Neighborhood of RT #4 [3779957, 3787262] P-type_ATPase_Cu-like RVT_N RVT-GII GIIM COG3547 Neighborhood of RT #5 [3824546, 3830029] RVT-GII GIIM DDE_Tnp_1_assoc DDE_Tnp_1 Feature: gene Location: 1141604-1141786 bp Ori: BBZ06970.1 Feature: domain Description: UvrA Location: 1141607-1141778 bp Feature: domain Description: UvrA Location: 1 1 41 607-1 1 41 778 bp Feature: gene Location: 1141822-1142628 bp Ori: BBZ06971.1 Feature: domain Description: MhpC Location: 1141870-1142620 bp Feature: domain Description: MhpC Location: 1 1 41 870-1 1 42620 bp Feature: gene Location: 1143252-1144757 bp Ori: BBZ06972.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143735-1144359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 43735-1 1 44359 bp Feature: domain Description: GIIM Note: maturase Location: 1144452-1144662 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 44452-1 1 44662 bp Feature: gene Location: 1144977-1145945 bp Ori: BBZ06973.1 Feature: domain Description: DDE_Tnp_1_4 Location: 1145013-1145802 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 1 4501 3-1 1 45802 bp Feature: gene Location: 1146020-1146361 bp Ori: BBZ06974.1 Feature: domain Description: HTH_Hin_like Location: 1146059-1146185 bp Feature: domain Description: HTH_Hin_like Location: 1 1 46059-1 1 461 85 bp Feature: gene Location: 1693756-1694214 bp Ori: BBZ07538.1 Feature: domain Description: SUF_scaf_2 Location: 1693765-1694179 bp Feature: domain Description: SUF_scaf_2 Location: 1 693765-1 6941 79 bp Feature: gene Location: 1694211-1694549 bp Ori: BBZ07539.1 Feature: domain Description: PaaD Location: 1694220-1694538 bp Feature: domain Description: PaaD Location: 1 694220-1 694538 bp Feature: gene Location: 1694884-1695273 bp Ori: BBZ07540.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694956-1695271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 694956-1 695271 bp Feature: gene Location: 1695283-1695978 bp Ori: BBZ07541.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1695289-1695580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 695289-1 695580 bp Feature: domain Description: GIIM Note: maturase Location: 1695676-1695883 bp Feature: domain Description: GIIM Note: maturase Location: 1 695676-1 695883 bp Feature: gene Location: 1696218-1697861 bp Ori: BBZ07542.1 Feature: domain Description: FAD_binding_3 Location: 1696248-1697157 bp Feature: domain Description: FAD_binding_3 Location: 1 696248-1 6971 57 bp Feature: gene Location: 1697942-1699048 bp Ori: BBZ07543.1 Feature: domain Description: OYE_like_5_FMN Location: 1697972-1699025 bp Feature: domain Description: OYE_like_5_FMN Location: 1 697972-1 699025 bp Feature: gene Location: 2993583-2993960 bp Feature: gene Location: 2993918-2994544 bp Feature: gene Location: 2994550-2995131 bp Ori: BBZ08781.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2994553-2994703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2994553-2994703 bp Feature: domain Description: GIIM Note: maturase Location: 2994787-2994994 bp Feature: domain Description: GIIM Note: maturase Location: 2994787-2994994 bp Feature: gene Location: 2995281-2995934 bp Ori: BBZ08782.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2995602-2995881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2995602-2995881 bp Feature: gene Location: 2996082-2996282 bp Feature: gene Location: 2996578-2997138 bp Feature: gene Location: 2997066-2997752 bp Ori: BBZ08785.1 Feature: domain Description: PinE Location: 2997099-2997642 bp Feature: domain Description: PinE Location: 2997099-2997642 bp Feature: gene Location: 2997749-2998009 bp Ori: BBZ08786.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2997752-2997983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2997752-2997983 bp Feature: gene Location: 2998015-2998311 bp Ori: BBZ08787.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2998117-2998228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29981 1 7-2998228 bp Feature: gene Location: 2999542-3000546 bp Ori: BBZ08788.1 Feature: domain Description: PRK08326 Location: 2999716-3000373 bp Feature: domain Description: PRK08326 Location: 299971 6-3000373 bp Feature: gene Location: 3000549-3001034 bp Feature: gene Location: 3779957-3782080 bp Ori: BBZ09573.1 Feature: domain Description: P-type_ATPase_Cu-like Location: 3780146-3782030 bp Feature: domain Description: P-type_ATPase_Cu-like Location: 37801 46-3782030 bp Feature: gene Location: 3783078-3783305 bp Feature: gene Location: 3784007-3785818 bp Ori: BBZ09575.1 Feature: domain Description: RVT_N Location: 3784064-3784304 bp Feature: domain Description: RVT_N Location: 3784064-3784304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3784361-3785018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3784361 -378501 8 bp Feature: domain Description: GIIM Note: maturase Location: 3785069-3785303 bp Feature: domain Description: GIIM Note: maturase Location: 3785069-3785303 bp Feature: gene Location: 3785778-3786890 bp Ori: BBZ09576.1 Feature: domain Description: COG3547 Location: 3785868-3786744 bp Feature: domain Description: COG3547 Location: 3785868-3786744 bp Feature: gene Location: 3787050-3787262 bp Feature: gene Location: 3824546-3824902 bp Feature: gene Location: 3825445-3826263 bp Feature: gene Location: 3826853-3828130 bp Ori: BBZ09620.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3827069-3827729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3827069-3827729 bp Feature: domain Description: GIIM Note: maturase Location: 3827810-3828041 bp Feature: domain Description: GIIM Note: maturase Location: 382781 0-3828041 bp Feature: gene Location: 3828292-3828651 bp Feature: gene Location: 3828884-3830029 bp Ori: BBZ09622.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 3828962-3829220 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 3828962-3829220 bp Feature: domain Description: DDE_Tnp_1 Location: 3829247-3829931 bp Feature: domain Description: DDE_Tnp_1 Location: 3829247-3829931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrA (COG0178), MhpC (COG0596), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701), HTH_Hin_like (cd00569), SUF_scaf_2 (TIGR01994), PaaD (TIGR02286), FAD_binding_3 (pfam01494), OYE_like_5_FMN (cd04747)
PinE (COG1961), PRK08326 (R2-like ligand-binding oxidase), P-type_ATPase_Cu-like (cd07552), RVT_N (pfam13655), COG3547 (Transposase ), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609)