myRT

myRT report for GCA_010730055.1_ASM1073005v1

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Seq: AP022575.1 Mycobacterium shinjukuense JCM 14233 DNA, complete genome (4504020 bp)
Overview 1 RT 1: 1037523-1044741 bp 2 RT 2: 1209495-1216108 bp 3 RT 3: 1463950-1469122 bp 4 RT 4: 1582080-1588112 bp 5 RT 5: 3097909-3102715 bp 6 RT 6: 3908727-3912091 bp Neighborhood of RT #1 [1037523, 1044782] LPLAT_MGAT-like Beta-lactamase RVT-GII GIIM PRK12476 Neighborhood of RT #2 [1209495, 1216395] AcyC AcyC gcvT RVT-GII GIIM PRK13357 ProP MFS_YcaD_like Neighborhood of RT #3 [1463950, 1469127] Rv1155_F420 EthD RVT-GII RVT-GII GIIM DUF222 COG5579 Neighborhood of RT #4 [1582080, 1588112] PLPDE_III_DSD_D-TA_like_2 PE RVT-GII RVT-GII GIIM Neighborhood of RT #5 [3097909, 3102834] GalT DUF222 RVT-GII GIIM group_II_RT_mat HTH_Tnp_1 Neighborhood of RT #6 [3908727, 3912096] PIN_MtVapC3_VapC21-like RVT-GII GIIM StbC PIN_NgFitB-like Feature: gene Location: 1037523-1038347 bp Ori: BBX72993.1 Feature: domain Description: LPLAT_MGAT-like Location: 1037613-1038276 bp Feature: domain Description: LPLAT_MGAT-like Location: 1 03761 3-1 038276 bp Feature: gene Location: 1038884-1040167 bp Ori: BBX72994.1 Gene: lipD Feature: domain Description: Beta-lactamase Location: 1039004-1040003 bp Feature: domain Description: Beta-lactamase Location: 1 039004-1 040003 bp Feature: gene Location: 1040675-1042177 bp Ori: BBX72995.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041155-1041779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 1 55-1 041 779 bp Feature: domain Description: GIIM Note: maturase Location: 1041875-1042076 bp Feature: domain Description: GIIM Note: maturase Location: 1 041 875-1 042076 bp Feature: gene Location: 1042119-1042556 bp Feature: gene Location: 1042905-1044782 bp Ori: BBX72997.1 Gene: fadD31 Feature: domain Description: PRK12476 Location: 1042908-1044741 bp Feature: domain Description: PRK1 2476 Location: 1 042908-1 044741 bp Feature: gene Location: 1209495-1210595 bp Ori: BBX73152.1 Feature: domain Description: AcyC Location: 1209618-1209951 bp Feature: domain Description: AcyC Location: 1 20961 8-1 209951 bp Feature: domain Description: AcyC Location: 1210128-1210584 bp Feature: domain Description: AcyC Location: 1 21 01 28-1 21 0584 bp Feature: gene Location: 1210640-1211743 bp Ori: BBX73153.1 Gene: gcvT Feature: domain Description: gcvT Location: 1210661-1211735 bp Feature: domain Description: gcvT Location: 1 21 0661 -1 21 1 735 bp Feature: gene Location: 1212509-1213675 bp Ori: BBX73154.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1212653-1213277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 2653-1 21 3277 bp Feature: domain Description: GIIM Note: maturase Location: 1213373-1213574 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 3373-1 21 3574 bp Feature: gene Location: 1213786-1214892 bp Ori: BBX73155.1 Gene: ilvE Feature: domain Description: PRK13357 Location: 1213816-1214887 bp Feature: domain Description: PRK1 3357 Location: 1 21 381 6-1 21 4887 bp Feature: gene Location: 1214818-1216395 bp Ori: BBX73156.1 Feature: domain Description: ProP Location: 1214932-1215616 bp Feature: domain Description: ProP Location: 1 21 4932-1 21 561 6 bp Feature: domain Description: MFS_YcaD_like Location: 1215658-1216108 bp Feature: domain Description: MFS_YcaD_like Location: 1 21 5658-1 21 61 08 bp Feature: gene Location: 1463950-1464393 bp Ori: BBX73419.1 Feature: domain Description: Rv1155_F420 Location: 1463974-1464385 bp Feature: domain Description: Rv1 1 55_F420 Location: 1 463974-1 464385 bp Feature: gene Location: 1464390-1465106 bp Ori: BBX73420.1 Feature: domain Description: EthD Location: 1464768-1464993 bp Feature: domain Description: EthD Location: 1 464768-1 464993 bp Feature: gene Location: 1465866-1466561 bp Ori: BBX73421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1466082-1466532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 466082-1 466532 bp Feature: gene Location: 1466601-1466966 bp Ori: BBX73422.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1466607-1466739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 466607-1 466739 bp Feature: domain Description: GIIM Note: maturase Location: 1466820-1466958 bp Feature: domain Description: GIIM Note: maturase Location: 1 466820-1 466958 bp Feature: gene Location: 1467055-1468527 bp Ori: BBX73423.1 Feature: domain Description: DUF222 Location: 1467163-1468138 bp Feature: domain Description: DUF222 Location: 1 4671 63-1 4681 38 bp Feature: gene Location: 1468693-1469127 bp Ori: BBX73424.1 Feature: domain Description: COG5579 Location: 1468702-1469122 bp Feature: domain Description: COG5579 Location: 1 468702-1 4691 22 bp Feature: gene Location: 1582080-1583324 bp Ori: BBX73520.1 Feature: domain Description: PLPDE_III_DSD_D-TA_like_2 Location: 1582155-1583319 bp Feature: domain Description: PLPDE_III_DSD_D-TA_like_2 Location: 1 5821 55-1 58331 9 bp Feature: gene Location: 1583477-1585357 bp Ori: BBX73521.1 Feature: domain Description: PE Location: 1583480-1583753 bp Feature: domain Description: PE Location: 1 583480-1 583753 bp Feature: gene Location: 1586008-1586940 bp Ori: BBX73522.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1586488-1586866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 586488-1 586866 bp Feature: gene Location: 1586867-1587274 bp Ori: BBX73523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1586870-1587089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 586870-1 587089 bp Feature: gene Location: 1587202-1587510 bp Ori: BBX73524.1 Feature: domain Description: GIIM Note: maturase Location: 1587208-1587409 bp Feature: domain Description: GIIM Note: maturase Location: 1 587208-1 587409 bp Feature: gene Location: 1587930-1588112 bp Feature: gene Location: 3097909-3099009 bp Ori: BBX74925.1 Gene: galT Feature: domain Description: GalT Location: 3098050-3099001 bp Feature: domain Description: GalT Location: 3098050-3099001 bp Feature: gene Location: 3099274-3100746 bp Ori: BBX74926.1 Feature: domain Description: DUF222 Location: 3099385-3100357 bp Feature: domain Description: DUF222 Location: 3099385-31 00357 bp Feature: gene Location: 3100679-3101698 bp Ori: BBX74927.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3100682-3101312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 00682-31 01 31 2 bp Feature: domain Description: GIIM Note: maturase Location: 3101393-3101624 bp Feature: domain Description: GIIM Note: maturase Location: 31 01 393-31 01 624 bp Feature: gene Location: 3101673-3101939 bp Ori: BBX74928.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 3101724-3101886 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 31 01 724-31 01 886 bp Feature: gene Location: 3102397-3102834 bp Ori: BBX74929.1 Feature: domain Description: HTH_Tnp_1 Location: 3102478-3102715 bp Feature: domain Description: HTH_Tnp_1 Location: 31 02478-31 0271 5 bp Feature: gene Location: 3908727-3908954 bp Feature: gene Location: 3908945-3909358 bp Ori: BBX75659.1 Gene: vapc2 Feature: domain Description: PIN_MtVapC3_VapC21-like Location: 3908966-3909347 bp Feature: domain Description: PIN_MtVapC3_VapC21 -like Location: 3908966-3909347 bp Feature: gene Location: 3910182-3911324 bp Ori: BBX75660.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3910302-3910926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 0302-391 0926 bp Feature: domain Description: GIIM Note: maturase Location: 3911022-3911223 bp Feature: domain Description: GIIM Note: maturase Location: 391 1 022-391 1 223 bp Feature: gene Location: 3911435-3911683 bp Ori: BBX75661.1 Feature: domain Description: StbC Location: 3911438-3911618 bp Feature: domain Description: StbC Location: 391 1 438-391 1 61 8 bp Feature: gene Location: 3911680-3912096 bp Ori: BBX75662.1 Gene: vapC_2 Feature: domain Description: PIN_NgFitB-like Location: 3911686-3912091 bp Feature: domain Description: PIN_NgFitB-like Location: 391 1 686-391 2091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LPLAT_MGAT-like (cd07987), Beta-lactamase (pfam00144), RVT-GII, GIIM (pfam08388), PRK12476 (putative fatty-acid--CoA ligase; Provisional), AcyC (COG2114), gcvT (TIGR00528), PRK13357 (branched-chain amino acid aminotransferase; Provisional), ProP (COG0477), MFS_YcaD_like (cd17477)
Rv1155_F420 (TIGR03618), EthD (pfam07110), DUF222 (pfam02720), COG5579 (Uncharacterized protein, DUF1810 family ), PLPDE_III_DSD_D-TA_like_2 (cd06813), PE (pfam00934), GalT (COG1085), group_II_RT_mat (TIGR04416), HTH_Tnp_1 (pfam01527), PIN_MtVapC3_VapC21-like (cd18755)
StbC (COG4691), PIN_NgFitB-like (cd18731)