myRT

myRT report for GCA_010731115.1_ASM1073111v1

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Seq: AP022616.1 Mycolicibacterium phocaicum JCM 15301 DNA, nearly complete genome (5853197 bp)
Overview 1 RT 1: 3348038-3351831 bp 2 RT 2: 3845207-3849483 bp 3 RT 3: 5079352-5084072 bp 4 RT 4: 5133935-5141329 bp 5 RT 5: 5236034-5240403 bp 6 RT 6: 5287572-5293944 bp Neighborhood of RT #1 [3348038, 3351932] InsE RVT-GII GIIM PHA02517 Big_9 Neighborhood of RT #2 [3845207, 3849494] InsE RVT-GII GIIM PHA02517 Transposase_mut Neighborhood of RT #3 [5079352, 5084072] anti_SigH_actin PHA02517 RVT-GII GIIM InsE Neighborhood of RT #4 [5133935, 5141329] PRK00331 GGDEF RVT-GII GIIM DUF222 Neighborhood of RT #5 [5236034, 5240444] InsE RVT-GII GIIM PHA02517 Tautomerase_3 Neighborhood of RT #6 [5287572, 5293994] ALDH_AldA-Rv0768 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3348038-3348403 bp Ori: BBZ56260.1 Feature: domain Description: InsE Location: 3348047-3348350 bp Feature: domain Description: InsE Location: 3348047-3348350 bp Feature: gene Location: 3348514-3348759 bp Feature: gene Location: 3348974-3350437 bp Ori: BBZ56262.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349304-3349994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3349304-3349994 bp Feature: domain Description: GIIM Note: maturase Location: 3350069-3350297 bp Feature: domain Description: GIIM Note: maturase Location: 3350069-3350297 bp Feature: gene Location: 3350566-3351540 bp Ori: BBZ56263.1 Feature: domain Description: PHA02517 Location: 3350797-3351517 bp Feature: domain Description: PHA0251 7 Location: 3350797-3351 51 7 bp Feature: gene Location: 3351570-3351932 bp Ori: BBZ56264.1 Feature: domain Description: Big_9 Location: 3351591-3351831 bp Feature: domain Description: Big_9 Location: 3351 591 -3351 831 bp Feature: gene Location: 3845207-3845581 bp Ori: BBZ56706.1 Feature: domain Description: InsE Location: 3845219-3845531 bp Feature: domain Description: InsE Location: 384521 9-3845531 bp Feature: gene Location: 3845692-3845937 bp Feature: gene Location: 3846154-3847617 bp Ori: BBZ56708.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3846484-3847174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3846484-38471 74 bp Feature: domain Description: GIIM Note: maturase Location: 3847249-3847477 bp Feature: domain Description: GIIM Note: maturase Location: 3847249-3847477 bp Feature: gene Location: 3847746-3848624 bp Ori: BBZ56709.1 Feature: domain Description: PHA02517 Location: 3847830-3848619 bp Feature: domain Description: PHA0251 7 Location: 3847830-384861 9 bp Feature: gene Location: 3848751-3849494 bp Ori: BBZ56710.1 Feature: domain Description: Transposase_mut Location: 3848814-3849483 bp Feature: domain Description: Transposase_mut Location: 384881 4-3849483 bp Feature: gene Location: 5079352-5080158 bp Ori: BBZ57920.1 Feature: domain Description: anti_SigH_actin Location: 5079418-5079625 bp Feature: domain Description: anti_SigH_actin Location: 507941 8-5079625 bp Feature: gene Location: 5080347-5081321 bp Ori: BBZ57921.1 Feature: domain Description: PHA02517 Location: 5080437-5081298 bp Feature: domain Description: PHA0251 7 Location: 5080437-5081 298 bp Feature: gene Location: 5081450-5082913 bp Ori: BBZ57922.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5081780-5082470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5081 780-5082470 bp Feature: domain Description: GIIM Note: maturase Location: 5082545-5082773 bp Feature: domain Description: GIIM Note: maturase Location: 5082545-5082773 bp Feature: gene Location: 5083488-5083853 bp Ori: BBZ57923.1 Feature: domain Description: InsE Location: 5083497-5083803 bp Feature: domain Description: InsE Location: 5083497-5083803 bp Feature: gene Location: 5083905-5084072 bp Feature: gene Location: 5133935-5135803 bp Ori: BBZ57977.1 Gene: glmS Feature: domain Description: PRK00331 Location: 5133938-5135801 bp Feature: domain Description: PRK00331 Location: 51 33938-51 35801 bp Feature: gene Location: 5135962-5137368 bp Ori: BBZ57978.1 Feature: domain Description: GGDEF Location: 5136577-5137069 bp Feature: domain Description: GGDEF Location: 51 36577-51 37069 bp Feature: gene Location: 5137678-5139114 bp Ori: BBZ57979.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5138002-5138683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 38002-51 38683 bp Feature: domain Description: GIIM Note: maturase Location: 5138755-5138965 bp Feature: domain Description: GIIM Note: maturase Location: 51 38755-51 38965 bp Feature: gene Location: 5139657-5140382 bp Ori: BBZ57980.1 Feature: domain Description: DUF222 Location: 5139672-5140251 bp Feature: domain Description: DUF222 Location: 51 39672-51 40251 bp Feature: gene Location: 5140592-5141329 bp Feature: gene Location: 5236034-5236399 bp Ori: BBZ58083.1 Feature: domain Description: InsE Location: 5236043-5236346 bp Feature: domain Description: InsE Location: 5236043-5236346 bp Feature: gene Location: 5236510-5236839 bp Feature: gene Location: 5236974-5238437 bp Ori: BBZ58085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5237304-5237994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5237304-5237994 bp Feature: domain Description: GIIM Note: maturase Location: 5238069-5238297 bp Feature: domain Description: GIIM Note: maturase Location: 5238069-5238297 bp Feature: gene Location: 5238590-5239510 bp Ori: BBZ58086.1 Feature: domain Description: PHA02517 Location: 5238653-5239478 bp Feature: domain Description: PHA0251 7 Location: 5238653-5239478 bp Feature: gene Location: 5240013-5240444 bp Ori: BBZ58087.1 Feature: domain Description: Tautomerase_3 Location: 5240016-5240403 bp Feature: domain Description: Tautomerase_3 Location: 524001 6-5240403 bp Feature: gene Location: 5287572-5289011 bp Ori: BBZ58136.1 Feature: domain Description: ALDH_AldA-Rv0768 Location: 5287593-5289006 bp Feature: domain Description: ALDH_AldA-Rv0768 Location: 5287593-5289006 bp Feature: gene Location: 5289037-5289915 bp Feature: gene Location: 5290494-5293058 bp Ori: BBZ58138.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5290824-5291514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5290824-5291 51 4 bp Feature: domain Description: GIIM Note: maturase Location: 5291589-5291748 bp Feature: domain Description: GIIM Note: maturase Location: 5291 589-5291 748 bp Feature: domain Description: PHA02517 Location: 5292174-5293035 bp Feature: domain Description: PHA0251 7 Location: 52921 74-5293035 bp Feature: gene Location: 5293273-5293518 bp Feature: gene Location: 5293629-5293994 bp Ori: BBZ58140.1 Feature: domain Description: InsE Location: 5293638-5293944 bp Feature: domain Description: InsE Location: 5293638-5293944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Big_9 (pfam17963), Transposase_mut (pfam00872), anti_SigH_actin (TIGR02949), PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase), GGDEF (TIGR00254), DUF222 (pfam02720)
Tautomerase_3 (pfam14832), ALDH_AldA-Rv0768 (cd07139)