myRT

myRT report for GCA_010917815.1_ASM1091781v1

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Seq: CP044446.1 Acinetobacter indicus strain CMG3-2 plasmid pCMG3-2-1, complete sequence (120957 bp)
Overview 1 RT 1: 33358-38201 bp Neighborhood of RT #1 [33358, 38230] HTH_XRE DDE_Tnp_IS66_C RVT_N RVT-GII GIIM DUF3287 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 33358-33597 bp Ori: QIC80496.1 Feature: domain Description: HTH_XRE Location: 33367-33499 bp Feature: domain Description: HTH_XRE Location: 33367-33499 bp Feature: gene Location: 33776-34003 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 33869-33980 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 33869-33980 bp Feature: gene Location: 34108-35769 bp Ori: QIC80497.1 Gene: ltrA Feature: domain Description: RVT_N Location: 34153-34396 bp Feature: domain Description: RVT_N Location: 341 53-34396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34441-35077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34441 -35077 bp Feature: domain Description: GIIM Note: maturase Location: 35131-35362 bp Feature: domain Description: GIIM Note: maturase Location: 351 31 -35362 bp Feature: gene Location: 36345-37766 bp Feature: domain Description: DUF3287 Location: 36369-36531 bp Feature: domain Description: DUF3287 Location: 36369-36531 bp Feature: domain Description: LZ_Tnp_IS66 Location: 36558-36783 bp Feature: domain Description: LZ_Tnp_IS66 Location: 36558-36783 bp Feature: domain Description: zf-IS66 Location: 36807-36933 bp Feature: domain Description: zf-IS66 Location: 36807-36933 bp Feature: domain Description: DDE_Tnp_IS66 Location: 36975-37767 bp Feature: domain Description: DDE_Tnp_IS66 Location: 36975-37767 bp Feature: gene Location: 37841-38230 bp Ori: QIC80498.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 37913-38201 bp Feature: domain Description: TnpB_IS66 Location: 3791 3-38201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3287 (pfam11690), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717)

Seq: CP044445.1 Acinetobacter indicus strain CMG3-2 chromosome, complete genome (3160342 bp)
Overview 1 RT 1: 270907-274369 bp 2 RT 2: 1531968-1534709 bp Neighborhood of RT #1 [270907, 274374] InsE RVT-GII GIIM PHA02517 Iron_traffic Neighborhood of RT #2 [1531968, 1534732] Zn_Tnp_IS1 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 270907-271640 bp Feature: domain Description: InsE Location: 270919-271216 bp Feature: domain Description: InsE Location: 2 70919-2 712 16 bp Feature: gene Location: 271807-272157 bp Feature: gene Location: 272154-273395 bp Ori: QIC77857.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 272352-273009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 72 352 -2 73009 bp Feature: domain Description: GIIM Note: maturase Location: 273087-273318 bp Feature: domain Description: GIIM Note: maturase Location: 2 73087-2 73318 bp Feature: gene Location: 273475-273960 bp Feature: domain Description: PHA02517 Location: 273478-273940 bp Feature: domain Description: PHA02 517 Location: 2 73478-2 73940 bp Feature: gene Location: 274105-274374 bp Ori: QIC77858.1 Feature: domain Description: Iron_traffic Location: 274108-274369 bp Feature: domain Description: Iron_traffic Location: 2 74108-2 74369 bp Feature: gene Location: 1531968-1532066 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1531980-1532064 bp Feature: domain Description: Zn_Tnp_IS1 Location: 1531980-1532 064 bp Feature: gene Location: 1532081-1532565 bp Feature: domain Description: PHA02517 Location: 1532084-1532360 bp Feature: domain Description: PHA02 517 Location: 1532 084-1532 360 bp Feature: gene Location: 1532645-1533886 bp Ori: QIC78957.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532843-1533500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532 843-1533500 bp Feature: domain Description: GIIM Note: maturase Location: 1533578-1533809 bp Feature: domain Description: GIIM Note: maturase Location: 1533578-1533809 bp Feature: gene Location: 1533883-1534233 bp Feature: gene Location: 1534379-1534732 bp Ori: QIC78959.1 Feature: domain Description: PHA02517 Location: 1534382-1534709 bp Feature: domain Description: PHA02 517 Location: 1534382 -1534709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Iron_traffic (pfam04362), Zn_Tnp_IS1 (pfam03811)