myRT

myRT report for GCA_010977575.1_ASM1097757v1

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Seq: CP048812.1 Halomonas socia strain CKY01 chromosome, complete genome (4753299 bp)
Overview 1 RT 1: 2170658-2177884 bp 2 RT 2: 2847682-2848864 bp 3 RT 3: 3344703-3349722 bp 4 RT 4: 4073316-4080831 bp Neighborhood of RT #1 [2170658, 2177919] HTH_1 PBP2_CrgA_like_5 HTH_29 HTH_23 DDE_3 RVT-GII Phosphodiest Phosphodiest MR_like Neighborhood of RT #2 [2847682, 2849007] RVT-GII GIIM Neighborhood of RT #3 [3344703, 3349913] TrmJ RVT_N RVT-GII GIIM HNH DDE_Tnp_IS66 DDE_Tnp_IS66_C LZ_Tnp_IS66 Neighborhood of RT #4 [4073316, 4080831] PAS_3 Tar GAF_2 PRK09776 FhlA PRK11359 PRK11359 PRK11359 RVT-GII GIIM group_II_RT_mat Feature: gene Location: 2170658-2171590 bp Feature: domain Description: HTH_1 Location: 2170679-2170850 bp Feature: domain Description: HTH_1 Location: 21 70679-21 70850 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 2170934-2171534 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 21 70934-21 71 534 bp Feature: gene Location: 2171616-2172713 bp Feature: domain Description: HTH_29 Location: 2171724-2171901 bp Feature: domain Description: HTH_29 Location: 21 71 724-21 71 901 bp Feature: domain Description: HTH_23 Location: 2171952-2172018 bp Feature: domain Description: HTH_23 Location: 21 71 952-21 7201 8 bp Feature: domain Description: DDE_3 Location: 2172138-2172573 bp Feature: domain Description: DDE_3 Location: 21 721 38-21 72573 bp Feature: gene Location: 2173673-2174785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2173763-2174432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 73763-21 74432 bp Feature: gene Location: 2174931-2176742 bp Feature: domain Description: Phosphodiest Location: 2174952-2175135 bp Feature: domain Description: Phosphodiest Location: 21 74952-21 751 35 bp Feature: domain Description: Phosphodiest Location: 2175792-2176185 bp Feature: domain Description: Phosphodiest Location: 21 75792-21 761 85 bp Feature: gene Location: 2176774-2177919 bp Feature: domain Description: MR_like Location: 2176783-2177884 bp Feature: domain Description: MR_like Location: 21 76783-21 77884 bp Feature: gene Location: 2847682-2849007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2847976-2848594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2847976-2848594 bp Feature: domain Description: GIIM Note: maturase Location: 2848642-2848864 bp Feature: domain Description: GIIM Note: maturase Location: 2848642-2848864 bp Feature: gene Location: 3344703-3345473 bp Feature: domain Description: TrmJ Location: 3344706-3345429 bp Feature: domain Description: TrmJ Location: 3344706-3345429 bp Feature: gene Location: 3345697-3346017 bp Feature: gene Location: 3346055-3347710 bp Feature: domain Description: RVT_N Location: 3346106-3346346 bp Feature: domain Description: RVT_N Location: 33461 06-3346346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3346394-3347039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3346394-3347039 bp Feature: domain Description: GIIM Note: maturase Location: 3347090-3347324 bp Feature: domain Description: GIIM Note: maturase Location: 3347090-3347324 bp Feature: domain Description: HNH Note: nucleases Location: 3347564-3347699 bp Feature: domain Description: HNH Note: nucleases Location: 3347564-3347699 bp Feature: gene Location: 3348100-3349119 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3348124-3348967 bp Feature: domain Description: DDE_Tnp_IS66 Location: 33481 24-3348967 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3348988-3349099 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3348988-3349099 bp Feature: gene Location: 3349131-3349913 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3349542-3349722 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3349542-3349722 bp Feature: gene Location: 4073316-4075025 bp Feature: domain Description: PAS_3 Location: 4073409-4073652 bp Feature: domain Description: PAS_3 Location: 4073409-4073652 bp Feature: domain Description: Tar Location: 4073865-4074873 bp Feature: domain Description: Tar Location: 4073865-4074873 bp Feature: gene Location: 4075099-4078545 bp Feature: domain Description: GAF_2 Location: 4075231-4075567 bp Feature: domain Description: GAF_2 Location: 4075231 -4075567 bp Feature: domain Description: PRK09776 Location: 4075567-4075948 bp Feature: domain Description: PRK09776 Location: 4075567-4075948 bp Feature: domain Description: FhlA Location: 4076218-4076530 bp Feature: domain Description: FhlA Location: 407621 8-4076530 bp Feature: domain Description: PRK11359 Location: 4076533-4076866 bp Feature: domain Description: PRK1 1 359 Location: 4076533-4076866 bp Feature: domain Description: PRK11359 Location: 4076899-4077226 bp Feature: domain Description: PRK1 1 359 Location: 4076899-4077226 bp Feature: domain Description: PRK11359 Location: 4077244-4078528 bp Feature: domain Description: PRK1 1 359 Location: 4077244-4078528 bp Feature: gene Location: 4078628-4079614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4078631-4079168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4078631 -40791 68 bp Feature: domain Description: GIIM Note: maturase Location: 4079219-4079435 bp Feature: domain Description: GIIM Note: maturase Location: 407921 9-4079435 bp Feature: gene Location: 4079635-4080033 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4079794-4079983 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4079794-4079983 bp Feature: gene Location: 4080145-4080831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), HTH_29 (pfam13551), HTH_23 (pfam13384), DDE_3 (pfam13358), RVT-GII, Phosphodiest (pfam01663), MR_like (cd03316), GIIM (pfam08388), TrmJ (COG0565)
RVT_N (pfam13655), HNH (pfam01844), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), LZ_Tnp_IS66 (pfam13007), PAS_3 (pfam08447), Tar (COG0840), GAF_2 (pfam13185), PRK09776 (putative diguanylate cyclase; Provisional), FhlA (COG3604)
PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), group_II_RT_mat (TIGR04416)