myRT

myRT report for GCA_010993915.2_ASM1099391v2

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Seq: CP053792.1 Streptococcus canis strain HL_77_1 chromosome, complete genome (2261128 bp)
Overview 1 RT 1: 1213094-1222393 bp 2 RT 2: 1229131-1236838 bp 3 RT 3: 1744802-1750431 bp Neighborhood of RT #1 [1213094, 1222393] TnpV SF2_C_SNF RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Neighborhood of RT #2 [1229131, 1236906] PRK06149 Phage_lysozyme2 PRK08581 TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Neighborhood of RT #3 [1744802, 1750457] TraG-D_C RVT-GII T4SS-DNA_transf COG3617 KilAC Feature: gene Location: 1213094-1213468 bp Ori: QKG77725.1 Feature: domain Description: TnpV Location: 1213130-1213460 bp Feature: domain Description: TnpV Location: 1 21 31 30-1 21 3460 bp Feature: gene Location: 1213449-1213961 bp Feature: domain Description: SF2_C_SNF Location: 1213737-1213884 bp Feature: domain Description: SF2_C_SNF Location: 1 21 3737-1 21 3884 bp Feature: gene Location: 1214054-1215832 bp Ori: QKG77726.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1214315-1215107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 431 5-1 21 51 07 bp Feature: domain Description: Intron_maturas2 Location: 1215212-1215443 bp Feature: domain Description: Intron_maturas2 Location: 1 21 521 2-1 21 5443 bp Feature: domain Description: HNHc Note: nucleases Location: 1215608-1215794 bp Feature: domain Description: HNHc Note: nucleases Location: 1 21 5608-1 21 5794 bp Feature: gene Location: 1216330-1221792 bp Ori: QKG77727.1 Feature: domain Description: N6_Mtase Location: 1218343-1218934 bp Feature: domain Description: N6_Mtase Location: 1 21 8343-1 21 8934 bp Feature: domain Description: COG4646 Location: 1219525-1221649 bp Feature: domain Description: COG4646 Location: 1 21 9525-1 221 649 bp Feature: gene Location: 1221842-1222393 bp Feature: gene Location: 1229131-1231932 bp Ori: QKG77732.1 Feature: domain Description: PRK06149 Location: 1230553-1230817 bp Feature: domain Description: PRK061 49 Location: 1 230553-1 23081 7 bp Feature: domain Description: Phage_lysozyme2 Location: 1230928-1231441 bp Feature: domain Description: Phage_lysozyme2 Location: 1 230928-1 231 441 bp Feature: domain Description: PRK08581 Location: 1231558-1231897 bp Feature: domain Description: PRK08581 Location: 1 231 558-1 231 897 bp Feature: gene Location: 1231934-1232953 bp Ori: QKG78657.1 Feature: domain Description: TraC-F-type Location: 1232084-1232780 bp Feature: domain Description: TraC-F-type Location: 1 232084-1 232780 bp Feature: gene Location: 1232901-1234574 bp Ori: QKG77733.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1232973-1233213 bp Feature: domain Description: RVT_N Location: 1 232973-1 23321 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1233261-1233921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 233261 -1 233921 bp Feature: domain Description: GIIM Note: maturase Location: 1233990-1234209 bp Feature: domain Description: GIIM Note: maturase Location: 1 233990-1 234209 bp Feature: gene Location: 1235103-1236596 bp Ori: QKG77734.1 Feature: domain Description: TraC-F-type Location: 1235883-1236285 bp Feature: domain Description: TraC-F-type Location: 1 235883-1 236285 bp Feature: gene Location: 1236553-1236906 bp Ori: QKG77735.1 Feature: domain Description: PrgI Location: 1236565-1236838 bp Feature: domain Description: PrgI Location: 1 236565-1 236838 bp Feature: gene Location: 1744802-1745044 bp Feature: gene Location: 1745137-1745727 bp Ori: QKG78152.1 Feature: domain Description: TraG-D_C Location: 1745218-1745539 bp Feature: domain Description: TraG-D_C Location: 1 74521 8-1 745539 bp Feature: gene Location: 1745750-1747660 bp Ori: QKG78153.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1746059-1746815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 746059-1 74681 5 bp Feature: gene Location: 1748411-1749736 bp Ori: QKG78154.1 Feature: domain Description: T4SS-DNA_transf Location: 1748834-1749680 bp Feature: domain Description: T4SS-DNA_transf Location: 1 748834-1 749680 bp Feature: gene Location: 1749726-1750457 bp Ori: QKG78155.1 Feature: domain Description: COG3617 Location: 1749729-1750095 bp Feature: domain Description: COG361 7 Location: 1 749729-1 750095 bp Feature: domain Description: KilAC Location: 1750107-1750431 bp Feature: domain Description: KilAC Location: 1 7501 07-1 750431 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), SF2_C_SNF (cd18793), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), PRK06149 (aminotransferase), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein)
TraC-F-type (TIGR02746), RVT_N (pfam13655), GIIM (pfam08388), PrgI (pfam12666), TraG-D_C (pfam12696), T4SS-DNA_transf (pfam02534), COG3617 (Prophage antirepressor ), KilAC (COG3645)