myRT

myRT report for GCA_011022255.1_ASM1102225v1

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Seq: CP048933.1 Klebsiella pneumoniae strain KP18-2079 chromosome, complete genome (5518817 bp)
Overview 1 RT 1: 1214581-1220314 bp 2 RT 2: 1380777-1384141 bp 3 RT 3: 1603258-1608451 bp 4 RT 4: 1842656-1849127 bp 5 RT 5: 1864868-1872370 bp 6 RT 6: 3159580-3164681 bp 7 RT 7: 3311972-3317336 bp 8 RT 8: 3384803-3389990 bp 9 RT 9: 3752829-3758383 bp Neighborhood of RT #1 [1214581, 1220319] dam Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1380777, 1384215] RVT-GII Terminase_2 Neighborhood of RT #3 [1603258, 1608501] IclR PRK15440 RVT-GII PRK15440 MFS_ExuT_GudP_like Neighborhood of RT #4 [1842656, 1849141] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #5 [1864868, 1872405] STKc_PknB_like RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #6 [3159580, 3164689] umuC PRK10276 RVT-GII XerC PinE Neighborhood of RT #7 [3311972, 3317389] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #8 [3384803, 3389990] PRK10597 RVT-GII PRK05318 Neighborhood of RT #9 [3752829, 3758403] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int YbjK Feature: gene Location: 1214581-1215432 bp Ori: QID66486.1 Feature: domain Description: dam Location: 1214584-1215355 bp Feature: domain Description: dam Location: 1 21 4584-1 21 5355 bp Feature: gene Location: 1215429-1217813 bp Ori: QID66487.1 Feature: domain Description: Phage_GPA Location: 1215993-1216959 bp Feature: domain Description: Phage_GPA Location: 1 21 5993-1 21 6959 bp Feature: gene Location: 1218291-1219778 bp Ori: QID66488.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1218696-1219386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 8696-1 21 9386 bp Feature: gene Location: 1219886-1220074 bp Feature: gene Location: 1220086-1220319 bp Ori: QID66490.1 Feature: domain Description: DinI Location: 1220131-1220314 bp Feature: domain Description: DinI Location: 1 2201 31 -1 22031 4 bp Feature: gene Location: 1380777-1380980 bp Feature: gene Location: 1380973-1381311 bp Feature: gene Location: 1381408-1382895 bp Ori: QID66648.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1381813-1382503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 381 81 3-1 382503 bp Feature: gene Location: 1383296-1383553 bp Feature: gene Location: 1383631-1384215 bp Ori: QID66650.1 Feature: domain Description: Terminase_2 Location: 1383676-1384141 bp Feature: domain Description: Terminase_2 Location: 1 383676-1 3841 41 bp Feature: gene Location: 1603258-1604043 bp Ori: QID66853.1 Feature: domain Description: IclR Location: 1603285-1604011 bp Feature: domain Description: IclR Location: 1 603285-1 60401 1 bp Feature: gene Location: 1604054-1604239 bp Ori: QID66854.1 Feature: domain Description: PRK15440 Location: 1604057-1604204 bp Feature: domain Description: PRK1 5440 Location: 1 604057-1 604204 bp Feature: gene Location: 1604569-1606056 bp Ori: QID66855.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1604974-1605664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 604974-1 605664 bp Feature: gene Location: 1606114-1607169 bp Gene: rhmD Feature: domain Description: PRK15440 Location: 1606120-1607167 bp Feature: domain Description: PRK1 5440 Location: 1 6061 20-1 6071 67 bp Feature: gene Location: 1607212-1608501 bp Ori: QID70484.1 Feature: domain Description: MFS_ExuT_GudP_like Location: 1607254-1608451 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 1 607254-1 608451 bp Feature: gene Location: 1842656-1844080 bp Ori: QID67038.1 Gene: sbcB Feature: domain Description: SbcB Location: 1842662-1844078 bp Feature: domain Description: SbcB Location: 1 842662-1 844078 bp Feature: gene Location: 1844261-1845424 bp Ori: QID67039.1 Gene: dacD Feature: domain Description: dacD Location: 1844264-1845419 bp Feature: domain Description: dacD Location: 1 844264-1 84541 9 bp Feature: gene Location: 1845942-1847429 bp Ori: QID67040.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1846347-1847037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 846347-1 847037 bp Feature: gene Location: 1847511-1847984 bp Ori: QID67041.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1847514-1847973 bp Feature: domain Description: PRK1 001 6 Location: 1 84751 4-1 847973 bp Feature: gene Location: 1848083-1849141 bp Ori: QID67042.1 Feature: domain Description: YccC Location: 1848089-1849127 bp Feature: domain Description: YccC Location: 1 848089-1 8491 27 bp Feature: gene Location: 1864868-1865971 bp Ori: QID67059.1 Feature: domain Description: STKc_PknB_like Location: 1865000-1865441 bp Feature: domain Description: STKc_PknB_like Location: 1 865000-1 865441 bp Feature: gene Location: 1866125-1866199 bp Feature: gene Location: 1866530-1867630 bp Ori: QID67060.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1866713-1867241 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 86671 3-1 867241 bp Feature: gene Location: 1867745-1869991 bp Ori: QID67061.1 Feature: domain Description: AAA_15 Location: 1867748-1868756 bp Feature: domain Description: AAA_1 5 Location: 1 867748-1 868756 bp Feature: gene Location: 1871386-1872405 bp Ori: QID67062.1 Feature: domain Description: DUF4917 Location: 1871446-1872370 bp Feature: domain Description: DUF491 7 Location: 1 871 446-1 872370 bp Feature: gene Location: 3159580-3160845 bp Ori: QID68272.1 Feature: domain Description: umuC Location: 3159583-3160843 bp Feature: domain Description: umuC Location: 31 59583-31 60843 bp Feature: gene Location: 3160847-3161266 bp Ori: QID70590.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3160850-3161261 bp Feature: domain Description: PRK1 0276 Location: 31 60850-31 61 261 bp Feature: gene Location: 3161346-3162833 bp Ori: QID68273.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3161751-3162441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 61 751 -31 62441 bp Feature: gene Location: 3163728-3164150 bp Ori: QID68274.1 Feature: domain Description: XerC Location: 3163764-3164109 bp Feature: domain Description: XerC Location: 31 63764-31 641 09 bp Feature: gene Location: 3164228-3164689 bp Feature: domain Description: PinE Location: 3164231-3164681 bp Feature: domain Description: PinE Location: 31 64231 -31 64681 bp Feature: gene Location: 3311972-3313237 bp Ori: QID68422.1 Feature: domain Description: umuC Location: 3311975-3313235 bp Feature: domain Description: umuC Location: 331 1 975-331 3235 bp Feature: gene Location: 3313240-3313659 bp Ori: QID68423.1 Gene: umuD Feature: domain Description: PRK10276 Location: 3313243-3313654 bp Feature: domain Description: PRK1 0276 Location: 331 3243-331 3654 bp Feature: gene Location: 3313738-3315225 bp Ori: QID68424.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3314143-3314833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 41 43-331 4833 bp Feature: gene Location: 3315840-3316082 bp Ori: QID68425.1 Feature: domain Description: DinI Location: 3315891-3316071 bp Feature: domain Description: DinI Location: 331 5891 -331 6071 bp Feature: gene Location: 3316253-3317389 bp Ori: QID70598.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3316433-3317336 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 331 6433-331 7336 bp Feature: gene Location: 3384803-3385093 bp Feature: gene Location: 3385105-3385338 bp Ori: QID68496.1 Feature: domain Description: PRK10597 Location: 3385108-3385333 bp Feature: domain Description: PRK1 0597 Location: 33851 08-3385333 bp Feature: gene Location: 3385417-3386904 bp Ori: QID68497.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3385822-3386512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3385822-338651 2 bp Feature: gene Location: 3387742-3389103 bp Ori: QID68498.1 Feature: domain Description: PRK05318 Location: 3387766-3389065 bp Feature: domain Description: PRK0531 8 Location: 3387766-3389065 bp Feature: gene Location: 3389277-3389990 bp Feature: gene Location: 3752829-3753707 bp Ori: QID70626.1 Feature: domain Description: Phage_CI_repr Location: 3752856-3753039 bp Feature: domain Description: Phage_CI_repr Location: 3752856-3753039 bp Feature: domain Description: Phage_CI_repr Location: 3753168-3753360 bp Feature: domain Description: Phage_CI_repr Location: 37531 68-3753360 bp Feature: domain Description: Phage_CI_C Location: 3753387-3753681 bp Feature: domain Description: Phage_CI_C Location: 3753387-3753681 bp Feature: gene Location: 3753719-3754663 bp Feature: gene Location: 3754762-3756249 bp Ori: QID68842.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3755167-3755857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37551 67-3755857 bp Feature: gene Location: 3756737-3757717 bp Ori: QID70627.1 Feature: domain Description: int Location: 3756740-3757667 bp Feature: domain Description: int Location: 3756740-3757667 bp Feature: gene Location: 3757840-3758403 bp Ori: QID68843.1 Feature: domain Description: YbjK Location: 3757846-3758383 bp Feature: domain Description: YbjK Location: 3757846-3758383 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dam (TIGR00571), Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), Terminase_2 (pfam03592), IclR (pfam01614), PRK15440 (L-rhamnonate dehydratase; Provisional), MFS_ExuT_GudP_like (cd17319), SbcB (COG2925), dacD (PRK11397)
PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), XerC (COG4973), PinE (COG1961)
GT9_LPS_heptosyltransferase (cd03789), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601), YbjK (COG3226)