myRT

myRT report for GCA_011022275.1_ASM1102227v1

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Seq: CP048934.1 Escherichia coli strain 190693 chromosome, complete genome (5151952 bp)
Overview 1 RT 1: 1953274-1959668 bp 2 RT 2: 3509707-3514541 bp 3 RT 3: 3957806-3963700 bp Neighborhood of RT #1 [1953274, 1959691] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Neighborhood of RT #2 [3509707, 3514541] CE4_Ecf1_like_5s CE4_Ecf1_like_5s InsE RVT-GII GIIM PHA02517 Neighborhood of RT #3 [3957806, 3963837] Phage_ASH RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 1953274-1954191 bp Ori: QID72444.1 Feature: domain Description: PFLE_PFLC Location: 1953310-1954165 bp Feature: domain Description: PFLE_PFLC Location: 1 95331 0-1 9541 65 bp Feature: gene Location: 1954328-1955233 bp Feature: gene Location: 1955719-1956110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1956049-1956109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 956049-1 9561 09 bp Feature: gene Location: 1956286-1956807 bp Ori: QID72446.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1956292-1956574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 956292-1 956574 bp Feature: domain Description: GIIM Note: maturase Location: 1956622-1956802 bp Feature: domain Description: GIIM Note: maturase Location: 1 956622-1 956802 bp Feature: gene Location: 1957390-1958619 bp Ori: QID72447.1 Feature: domain Description: YesM Location: 1957870-1958611 bp Feature: domain Description: YesM Location: 1 957870-1 95861 1 bp Feature: gene Location: 1958636-1959691 bp Ori: QID72448.1 Feature: domain Description: YesN Location: 1958639-1959029 bp Feature: domain Description: YesN Location: 1 958639-1 959029 bp Feature: domain Description: YesN Location: 1959371-1959668 bp Feature: domain Description: YesN Location: 1 959371 -1 959668 bp Feature: gene Location: 3509707-3510549 bp Ori: QID75331.1 Feature: domain Description: CE4_Ecf1_like_5s Location: 3509806-3510202 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 3509806-351 0202 bp Feature: domain Description: CE4_Ecf1_like_5s Location: 3510208-3510487 bp Feature: domain Description: CE4_Ecf1 _like_5s Location: 351 0208-351 0487 bp Feature: gene Location: 3510735-3511452 bp Feature: domain Description: InsE Location: 3510774-3511023 bp Feature: domain Description: InsE Location: 351 0774-351 1 023 bp Feature: gene Location: 3512125-3513633 bp Ori: QID75332.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3512383-3513115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 2383-351 31 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 3513190-3513388 bp Feature: domain Description: GIIM Note: maturase Location: 351 31 90-351 3388 bp Feature: gene Location: 3513714-3514201 bp Feature: domain Description: PHA02517 Location: 3513717-3513888 bp Feature: domain Description: PHA0251 7 Location: 351 371 7-351 3888 bp Feature: gene Location: 3514284-3514541 bp Feature: gene Location: 3957806-3958276 bp Feature: gene Location: 3958322-3958462 bp Ori: QID74140.1 Feature: domain Description: Phage_ASH Location: 3958349-3958442 bp Feature: domain Description: Phage_ASH Location: 3958349-3958442 bp Feature: gene Location: 3958623-3961832 bp Ori: QID74141.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3959151-3959640 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 39591 51 -3959640 bp Feature: domain Description: nitrilase Location: 3961146-3961743 bp Feature: domain Description: nitrilase Location: 3961 1 46-3961 743 bp Feature: gene Location: 3962127-3962930 bp Ori: QID74142.1 Feature: domain Description: AbiEi_3_N Location: 3962160-3962421 bp Feature: domain Description: AbiEi_3_N Location: 39621 60-3962421 bp Feature: domain Description: AbiEi_3 Location: 3962433-3962889 bp Feature: domain Description: AbiEi_3 Location: 3962433-3962889 bp Feature: gene Location: 3962917-3963837 bp Ori: QID74143.1 Feature: domain Description: AbiEii Location: 3962959-3963700 bp Feature: domain Description: AbiEii Location: 3962959-3963700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLE_PFLC (TIGR02494), RVT-GII, GIIM (pfam08388), YesM (COG2972), YesN (COG4753), CE4_Ecf1_like_5s (cd10969), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), Phage_ASH (pfam10554), RVT-UG5
nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)